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ENH: references to website
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stnava committed Jul 8, 2013
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">

Expand Down Expand Up @@ -89,16 +90,57 @@ <h2>Nicholas J. Tustison - UVA</h2>
</dd>
<dd class="clear"></dd>

<dt>Methods</dt>
<dt>Methods References</dt>
<dd>
<h2>Image Registration</h2>
<p>Diffeomorphisms: Translation, Rigid, Affine, SyN, Velocity</p>

<h2>Image Segmentation</h2>
<p>Atropos Multivar-EM Segmentation, N4 Bias Correction, DiReCT cortical thickness</p>
<p>Diffeomorphisms: <a
href="http://www.ncbi.nlm.nih.gov/pubmed/17659998">SyN</a>,
Independent Evaluation: <a
href="http://www.ncbi.nlm.nih.gov/pubmed/19195496">Klein</a>,
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/21632295">Murphy</a>,
Template Construction
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/15501083">(2004)</a><a
href="http://www.ncbi.nlm.nih.gov/pubmed/19818860"> (2010)</a>,
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/20851191">Similarity
Metrics</a>,
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/18995188">Multivariate
registration</a>,
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/23151955">Multiple
modality analysis and statistical bias</a>
</p>
<h2>Image Segmentation</h2>
<p>Atropos Multivar-EM Segmentation <a
href="http://www.ncbi.nlm.nih.gov/pubmed/21373993">(link)</a>,
Multi-atlas methods <a href="http://www.ncbi.nlm.nih.gov/pubmed/21237273N4">(link)</a>, Bias
Correction <a
href="http://www.ncbi.nlm.nih.gov/pubmed/20378467">(link)</a>,
DiReCT cortical thickness <a
href="http://www.ncbi.nlm.nih.gov/pubmed/19150502">(link)</a>,
DiReCT in
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/23516289">chimpanzees</a>
</p>

<h2>Multivariate Analysis <span>Eigenanatomy</span></h2>
<p>Sparse PCA, Sparse CCA, Sparse Regression</p>
<h2>Multivariate Analysis <span>Eigenanatomy <a
href="http://www.ncbi.nlm.nih.gov/pubmed/23286132">(1)</a>
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/23475817">(2)</a>
</span></h2>
<p>Prior-Based Eigenanatomy <a
href="http://www.ncbi.nlm.nih.gov/pubmed/?">(in
prep)</a>,
Sparse CCA <a
href="http://www.ncbi.nlm.nih.gov/pubmed/20083207">(1)</a>,
<a
href="http://www.ncbi.nlm.nih.gov/pubmed/20879247">(2)</a>,
Sparse Regression <a
href="http://link.springer.com/chapter/10.1007%2F978-3-642-38868-2_8">(link)</a>
</p>

<h2>ImageMath <span>Useful!</span></h2>
<p>morphology, GetLargestComponent, CCA, FillHoles
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