WIP: test a minimal ants build

ANTS.cmake

@@ -45,6 +45,7 @@ message(STATUS "Building ${PROJECT_NAME} version \"${${PROJECT_NAME}_VERSION}\""
 find_package(ITK 4 REQUIRED)
 include(${ITK_USE_FILE})
 
+
 # Set up VTK
 option(USE_VTK "Use VTK Libraries" OFF)
 if(USE_VTK)

Examples/CMakeLists.txt

@@ -36,33 +36,41 @@ endmacro()
 #add_executable(${PROG_WITH_NO_FLAG} ${PROG_WITH_NO_FLAG}.cxx)
 #target_link_libraries(${PROG_WITH_NO_FLAG} antsUtilities ${ITK_LIBRARIES})
 
-set(BASE_ANTS_APPS
+set(CORE_ANTS_APPS
+  antsAffineInitializer
+  ImageMath
+  SurfaceCurvature
+  SurfaceBasedSmoothing
+  CreateJacobianDeterminantImage
+  ThresholdImage
+  ResampleImage
+  sccan
+  N4BiasFieldCorrection
+  N3BiasFieldCorrection
+  KellyKapowski
+  antsRegistration
+  antsMotionCorrStats
+  antsMotionCorr
+  antsApplyTransforms
+  LabelGeometryMeasures
+  LabelClustersUniquely
+  Atropos
+)
+
+set(MORE_ANTS_APPS
   ANTS
   ANTSJacobian
   PrintHeader
   ResetDirection
-  # ResetDirection2
-  # BoykovGraphCutFilter
-  # GeneralLinearModel
   ANTSUseLandmarkImagesToGetAffineTransform
   ANTSUseLandmarkImagesToGetBSplineDisplacementField
   ANTSUseDeformationFieldToGetAffineTransform
-  # FDR
-  antsAffineInitializer
-  # antsSimilarityInitializer
-  ImageMath
-  SurfaceCurvature
-  SurfaceBasedSmoothing
-  # test
-  # WarpImage
   LaplacianThickness
   SetOrigin
   SetSpacing
   SetDirectionByMatrix
-  # WarpFunctionalImage
   ConvertScalarImageToRGB
   CreateWarpedGridImage
-  CreateJacobianDeterminantImage
   MeasureImageSimilarity
   ConvertToJpg
   ConvertImagePixelType
@@ -71,60 +79,44 @@ set(BASE_ANTS_APPS
   AverageImages
   AverageTensorImages
   ImageSetStatistics
-  ThresholdImage
   MultiplyImages
   SmoothImage
   ClusterImageStatistics
-  LabelClustersUniquely
-  # StudentsTestOnImages
   LabelOverlapMeasures
   LesionFilling
   MeasureMinMaxMean
   WarpImageMultiTransform
   ComposeMultiTransform
   StackSlices
   MemoryTest
-  # ANTSOrientImage
   PermuteFlipImageOrientationAxes
   ImageCompare
   ResampleImageBySpacing
-  # ResampleImageByOtherImage
   CopyImageHeaderInformation
   WarpTimeSeriesImageMultiTransform
-  ResampleImage
   ExtractSliceFromImage
   ExtractRegionFromImage
   ExtractRegionFromImageByMask
-  LabelGeometryMeasures
   PasteImageIntoImage
   TileImages
   CreateTiledMosaic
   CreateImage
   WarpTensorImageMultiTransform
   ReorientTensorImage
   RebaseTensorImage
-  N3BiasFieldCorrection
-  N4BiasFieldCorrection
   KellySlater
-  KellyKapowski
   CreateDTICohort
   AverageAffineTransform
   AverageAffineTransformNoRigid
   antsAlignOrigin
-  antsRegistration
   simpleSynRegistration
-  antsApplyTransforms
   antsApplyTransformsToPoints
   CompositeTransformUtil
-  antsMotionCorr
-  antsMotionCorrStats
   antsMotionCorrDiffusionDirection
   antsSliceRegularizedRegistration
-  sccan
   CreateDisplacementField
   ANTSIntegrateVectorField
   ANTSIntegrateVelocityField
-  Atropos
   ConvertTransformFile
   compareTwoTransforms
   TimeSCCAN
@@ -136,10 +128,19 @@ set(BASE_ANTS_APPS
   antsTransformInfo
   antsUtilitiesTesting
 )
-foreach(ANTS_APP ${BASE_ANTS_APPS})
+
+
+foreach(ANTS_APP ${CORE_ANTS_APPS})
   STANDARD_ANTS_BUILD(${ANTS_APP} "")
 endforeach()
 
+if (BUILD_ALL_ANTS_APPS)
+foreach(ANTS_APP ${MORE_ANTS_APPS})
+  STANDARD_ANTS_BUILD(${ANTS_APP} "")
+endforeach()
+endif(BUILD_ALL_ANTS_APPS)
+
+
 if(USE_VTK)
 find_package(VTK 6.2 REQUIRED NO_MODULE)
 find_package(VTK COMPONENTS

SuperBuild.cmake

@@ -95,6 +95,8 @@ CMAKE_DEPENDENT_OPTION(
 
 set(EXTERNAL_PROJECT_BUILD_TYPE "Release" CACHE STRING "Default build type for support libraries")
 
+option(BUILD_ALL_ANTS_APPS "Build all ANTs apps" ON)
+
 option(USE_SYSTEM_ITK "Build using an externally defined version of ITK" OFF)
 option(USE_SYSTEM_SlicerExecutionModel "Build using an externally defined version of SlicerExecutionModel"  OFF)
 

SuperBuild/External_ITKv4.cmake

@@ -112,6 +112,10 @@ if(NOT DEFINED ${extProjName}_DIR AND NOT ${USE_SYSTEM_${extProjName}})
       -DITK_FUTURE_LEGACY_REMOVE:=BOOL=ON
       -DITKV3_COMPATIBILITY:BOOL=ON
       -DITK_BUILD_DEFAULT_MODULES:BOOL=ON
+#      -DITK_MODULE_Core:BOOL=ON
+#      -DITK_MODULE_IO:BOOL=ON
+#      -DITK_MODULE_Filtering:BOOL=ON
+#      -DITK_MODULE_Registration:BOOL=ON
       #-DITK_INSTALL_NO_DEVELOPMENT:BOOL=ON
       -DKWSYS_USE_MD5:BOOL=ON # Required by SlicerExecutionModel
       -DITK_WRAPPING:BOOL=OFF #${BUILD_SHARED_LIBS} ## HACK:  QUICK CHANGE