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@genepi

Institute of Genetic Epidemiology

Medical University of Innsbruck

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  1. cloudgene cloudgene Public

    A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

    Java 37 19

  2. imputationserver imputationserver Public

    Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

    Java 79 43

  3. nf-gwas nf-gwas Public

    A nextflow pipeline to perform state-of-the-art genome-wide association studies.

    Nextflow 64 22

  4. haplogrep3 haplogrep3 Public

    Free mtDNA Haplogroup Classification Service

    Java 23 2

  5. mtdna-server-2 mtdna-server-2 Public

    mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes

    Nextflow 10

  6. haplocheck haplocheck Public

    Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies

    HTML 17 2

Repositories

Showing 10 of 59 repositories
  • genepi/michigan-imputationserver’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 19, 2024
  • genepi/imputationserver2’s past year of commit activity
    Nextflow 11 MIT 3 3 1 Updated Dec 19, 2024
  • genepi/imputationserver-utils’s past year of commit activity
    Java 1 MIT 1 0 0 Updated Dec 18, 2024
  • umi-pipeline-nf Public

    Nextflow pipeline to analyze ONT UMI Sequencing data

    genepi/umi-pipeline-nf’s past year of commit activity
    Python 3 MPL-2.0 1 6 0 Updated Dec 4, 2024
  • cloudgene3 Public

    A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.

    genepi/cloudgene3’s past year of commit activity
    Java 13 MIT 2 0 0 Updated Nov 22, 2024
  • pre-imputation-qc Public

    Prepare your data for Genotype Imputation

    genepi/pre-imputation-qc’s past year of commit activity
    Nextflow 0 MIT 0 0 1 Updated Nov 22, 2024
  • imputationserver Public

    Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

    genepi/imputationserver’s past year of commit activity
    Java 79 AGPL-3.0 43 46 0 Updated Sep 28, 2024
  • mtdna-server-2 Public

    mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes

    genepi/mtdna-server-2’s past year of commit activity
    Nextflow 10 MIT 0 2 0 Updated Sep 10, 2024
  • haplogrep3 Public

    Free mtDNA Haplogroup Classification Service

    genepi/haplogrep3’s past year of commit activity
    Java 23 MIT 2 8 1 Updated Aug 16, 2024
  • ngs-class Public

    Next Gen Sequencing Course - Medical University of Innsbruck

    genepi/ngs-class’s past year of commit activity
    Nextflow 2 1 0 0 Updated Aug 7, 2024

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