Bayesian Inferential Regression for Differential Microbiome Analysis (BIRDMAn) is a framework for performing differential abundance analysis through Bayesian inference.
See the documentation for details on usage.
Currently BIRDMAn requires Python 3.8 or higher.
We recommend using mamba for installation of dependencies.
conda install -c conda-forge biom-format patsy xarray arviz cmdstanpy
pip install birdman