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  • Miltenyi Biotec
  • Teterow, Germany

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Achievement: Pull SharkAchievement: Starstruck

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  • io_lib Public

    Forked from jkbonfield/io_lib

    Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.

    C Other Updated Apr 20, 2021

  • yalora Public

    Yet another long read aligner

    C++ GNU General Public License v3.0 Updated Oct 4, 2020

  • alignalt Public

    Program aligning contigs to reference regions for detecting matching stretches

    C++ GNU General Public License v2.0 Updated Sep 11, 2020

  • MultiQC Public

    Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Python GNU General Public License v3.0 Updated Apr 30, 2020

  • bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

    C GNU General Public License v3.0 Updated Jan 30, 2020

  • libmaus2 Public archive

    collection of data structures and algorithms

    C++ 18 11 Other Updated Mar 19, 2019

  • biobambam2 Public archive

    Tools for early stage alignment file processing

    C++ 93 17 Other Updated Mar 12, 2019

  • VGPirpbin Public

    VGP IRP ascii <-> binary converters

    C Updated Mar 4, 2019

  • VGPirp Public

    Reader/writer for the VGP irp file format

    C++ GNU General Public License v3.0 Updated Mar 3, 2019

  • daccord Public

    d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly

    C++ 19 1 Other Updated Sep 12, 2018

  • tensorflow Public

    Forked from tensorflow/tensorflow

    Computation using data flow graphs for scalable machine learning

    C++ Apache License 2.0 Updated Aug 29, 2018

  • lastools Public

    Tools for processing DALIGNER .las files

    C++ 3 Other Updated Jun 5, 2018

  • loresim2 Public

    C++ 1 Other Updated Jun 5, 2018

  • DALIGNER Public

    Forked from thegenemyers/DALIGNER

    Find all significant local alignments between reads

    C Other Updated Jun 4, 2018

  • hpcsched Public

    HPC job dependency scheduler

    C++ Other Updated May 29, 2018

  • damapper_bwt Public

    damapper plus BWT based seed searching

    C++ 1 GNU General Public License v3.0 Updated May 8, 2018

  • DASCRUBBER Public

    Forked from thegenemyers/DASCRUBBER

    Alignment-based Scrubbing pipeline

    C Other Updated Feb 9, 2018

  • DAMAPPER Public

    Forked from thegenemyers/DAMAPPER

    long read to reference mapping tool

    C Other Updated Nov 11, 2017

  • bambamc Public

    lightweight C implementation of name collating BAM file input and BAM file output

    C 5 3 Other Updated Aug 30, 2017

  • bwtb3m Public

    Burrows Wheeler Transform By Balanced Block Merging

    C++ 2 1 GNU General Public License v3.0 Updated Jul 4, 2017

  • compile_damapper Public

    Compilation and wrapper scripts for running damapper

    Shell GNU General Public License v3.0 Updated May 23, 2017

  • canu Public

    Forked from marbl/canu

    A single molecule sequence assembler for genomes large and small.

    C++ Updated Feb 2, 2017

  • DAZZ_DB Public

    Forked from thegenemyers/DAZZ_DB

    The Dazzler Data Base

    C Other Updated Aug 2, 2016

  • alternatives Public

    Detection of alternatives by local assembly of short reads

    C++ 1 GNU General Public License v2.0 Updated Apr 27, 2016

  • REAL Public

    Forked from solonas13/REAL

    REAL: an efficient REad ALigner for next-generation sequencing reads

    C++ Other Updated Apr 1, 2016

  • FIT Public

    FIT

    Shell Updated Jan 15, 2016

  • translocations Public

    Tools for translocation analysis

    C++ GNU General Public License v3.0 Updated Jan 14, 2016

  • prs Public

    Parallel radix sorting

    C Updated Dec 23, 2015

  • loresim Public

    Long read simulation

    C++ Other Updated Jun 17, 2015

  • biobambam Public archive

    Tools for bam file processing

    C++ 55 20 Other Updated Apr 20, 2015