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  1. panaroo Public

    An updated pipeline for pangenome investigation

    Python 288 33

  2. panstripe Public

    post processing of bacterial pangenome gene presence/absence matrices

    R 59 7

  3. fastbaps Public

    A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

    R 61 8

  4. tracs Public

    Fast pairwise transmission inference from single genome and/or metagenomic data

    Python 19 1

  5. rhierbaps Public

    rhierbaps: R implementation of hierBAPS

    R 34 3

  6. pairsnp Public

    A set of scripts for calculating pairwise SNP distance

    39 7

166 contributions in the last year

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March 2025

5 contributions in private repositories Mar 3 – Mar 18
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