Fix circle test issue

guigolab · May 29, 2017 · ea75521 · ea75521
1 parent 93a18ee
commit ea75521
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/ci b/ci
@@ -5,7 +5,7 @@ set -o pipefail
 OUT_DIR=data
 
 case "$1" in
-  test)
+  run)
     echo "Running test pipeline..." >&2
     nextflow run . -resume
     ;;
@@ -14,11 +14,11 @@ case "$1" in
     md5sum -c ${OUT_DIR}/md5s.txt
     ;;
   cleanup)
-	echo "Cleaning up test results..." >&2
+    echo "Cleaning up test results..." >&2
     find ${OUT_DIR} -type l -exec rm {} \+
     find ${OUT_DIR} -type d -empty -exec rmdir {} \+
     ;;
   *)
-    echo "Usage: run {test|validate|cleanup}" >&2
+    echo "Usage: run {run|validate|cleanup}" >&2
     exit 1
 esac
diff --git a/circle.yml b/circle.yml
@@ -11,5 +11,4 @@ test:
     - docker pull guigolab/ipsa-nf@sha256:88e680da318023d2a577893d5c4f0324ad720f83b13830b4e29f2d03f77490bb
     - curl -fsSL get.nextflow.io | bash 
   override:
-    - ./ci run
-    - (set -x && ./ci validate)
+    - ./ci run && ./ci validate