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Commits on Jul 19, 2019

• Move Perl utility modules to bin - #4

  emi80

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Commits on Jul 19, 2018

• Run one mergeGFFzeta process for each output feature - close #3

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Commits on Jul 12, 2018

• Add gitignore file

  emi80

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  7fde0d3

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• Check for the existence of the genome input file or indeces - fix #2

  emi80

  committed
  d615ee2

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• Fix input file name and prefix in genomeIndex process - more fixes for #1

  emi80

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  e0b442f

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Commits on Jul 10, 2018

• Support .fasta extension for genome input file - fix #1

  emi80

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Commits on Mar 2, 2018

• Switch to Travis CI

  emi80

  committed
  c06c1b3

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Commits on Jun 2, 2017

• Remove circle token from README [skip ci]

  emi80

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Commits on Jun 1, 2017

• Add LICENSE file

  emi80

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  eedd63b

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• Update readme [ci skip]

  emi80

  committed
  9a52fa2

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• Update test data md5sums - remove B07 merged output

  emi80

  committed
  7de357c

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• Removed unused scripts

  emi80

  committed
  d003ae6

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• Update readme

  emi80

  committed
  5cfaeb0

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• Update usage message

  emi80

  committed
  c2334cc

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• Remove spices process and merged output

  emi80

  committed
  9900357

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• Add license disclaimer and update parameters

  emi80

  committed
  9873b89

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• Update image version and description in Dockerfile

  emi80

  committed
  e4e6ea6

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• Update pipeline usage message

  emi80

  committed
  8f2f392

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• Pipeline parameters cleanup

  emi80

  committed
  4788a95

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• Simplify index file - reduce number of fields

  emi80

  committed
  76fe9b2

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• Rename groovy library and update pipeline

  emi80

  committed
  51d2bf6

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Commits on May 31, 2017

• Update circle to run microexons too

  emi80

  committed
  e3fcefb

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• Add .circ file

  emi80

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  d1441eb

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• Update Docker image in Nextflow config file

  emi80

  committed
  8d66f94

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• Update pipeline to IPSA 4.0 workflow

  emi80

  committed
  330054f

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• Update md5sum vor IPSA 4.0

  emi80

  committed
  151649e

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• Add awk versions of some Perl scripts

  emi80

  committed
  6d47533

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• Update Perl scripts with updates from IPSA 4.0

  emi80

  committed
  4c28a01

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• Update docker file - install ‘gawk’

  emi80

  committed
  202c9ec

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• Update ci run command to accept arguments

  emi80

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  6f39a34

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Commits on May 30, 2017

• Fix ci script usage message

  emi80

  committed
  a8e3193

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• Fix issue using set with multiple target channels

  emi80

  committed
  e1c7a00

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• Update syntax and code formatting in pipeline code

  emi80

  committed
  d776816

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Commits on May 29, 2017

• Fix value channels when specifying genome and annotation indices

  emi80

  committed
  22cc815

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• Use value channel for genome and annotation indices

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