Short-read sequencing tools

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

100 numpy exercises (100% complete)

The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.

Parse samtools pileup file to get how many bases and what kind of bases are called

multipcr primer designer

open source for wechat-official-account (ID: PyDataLab)

A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

Python - 100天从新手到大师

A repository for my work on rCRUX

Data Analytics with R, instructed by Xinbo Ai, at Beijing University of Posts and Telecommunications

automated benchmarking of recombination detection methods

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A snakemake pipeline for performing read and assembly based shotgun metagenomics from QC to statistical analysis and visualizations

Snakemake workflow for running kneaddata

An ensemble approach to accurately detect somatic mutations using SomaticSeq

Tumor Mutational Burden

VarDict

Variant calling and somatic mutation/CNV detection for next-generation sequencing data

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