Convert the Sanger primer design workflow from primer3 website to command line.

Illustrations learning python for bioinformatics

Bioinformatics data analysis and visualization toolkit

Pattern Recognition for Cell-free DNA

GUI for ChatGPT API and any LLM

CN-Learn

Read coverage calculator for metagenomics

ctDNA analysis pipeline

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A pipeline for processing tumor normal WES data with VarScan2.

FastGPT is a knowledge-based QA system built on the LLM, offers out-of-the-box data processing and model invocation capabilities, allows for workflow orchestration through Flow visualization!

Tools for processing fastq files

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Finder of Somatic Fusion Genes in RNA-seq data

This repository contains Jupyter Notebooks containing GATK Best Practices Workflows

Gene fusion detection and visualization

HGVS variant name parsing and generation

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

Microsatellite Instability Classification using Multiple Instance Learning

Implementations of the machine learning algorithm with Python and numpy

This python script parses a mpileup file to extract the coverage of each base at each position.