MedHMP

Source codes of the paper "Hierarchical Pretraining on Multimodal Electronic Health Records" (https://aclanthology.org/2023.emnlp-main.171.pdf).

Datasets

The original datasets of MIMIC-III and MIMIC-IV can be found in https://physionet.org/content/mimiciii/1.4/ and https://physionet.org/content/mimiciv/2.2/. Clinical notes of MIMIC-IV is available at https://physionet.org/content/mimic-iv-note/2.2/. Permission from the data owner is required.

Data Preprocessing

Codes for data preprocessing can be accessed at https://github.com/MLD3/FIDDLE-experiments/tree/master/mimic3_experiments.

More details will come soon.

Acknowledgement

If you find any source provided in this repo or our paper are useful, please cite our paper using this BibTex:

@inproceedings{wang2023hierarchical,
  title={Hierarchical Pretraining on Multimodal Electronic Health Records},
  author={Wang, Xiaochen and Luo, Junyu and Wang, Jiaqi and Yin, Ziyi and Cui, Suhan and Zhong, Yuan and Wang, Yaqing and Ma, Fenglong},
  booktitle={Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing},
  pages={2839--2852},
  year={2023}
}