heche-psb
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wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
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evotree Public
a python library of processing phylogenetic tree
Python GNU General Public License v3.0 UpdatedJan 31, 2025 -
fossiler Public
Python package and CLI for finding available fossils
Python GNU General Public License v3.0 UpdatedNov 25, 2024 -
Angiosperm_WGDs Public
This is the repository for the code of different analysis involved in our manuscript.
Python UpdatedNov 22, 2024 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedApr 26, 2024 -
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Agora Public
Forked from DyogenIBENS/AgoraAlgorithm For Gene Order Reconstruction in Ancestors
Python Other UpdatedApr 11, 2023 -
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Machine-Learning-Course-2days Public
Forked from sdgroeve/Machine-Learning-Course-2daysJupyter Notebook UpdatedNov 15, 2022 -
ML-course-VIB-2021 Public
Forked from sdgroeve/ML-course-VIB-2021Jupyter Notebook UpdatedNov 14, 2022 -
SubPhaser Public
Forked from zhangrengang/SubPhaserPhase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers.
Python GNU General Public License v3.0 UpdatedApr 23, 2022 -
ksrates Public
Forked from VIB-PSB/ksratesksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-ortholog Ks distributions.
Python GNU General Public License v3.0 UpdatedMar 3, 2022 -
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Whale.jl Public
Forked from arzwa/Whale.jlAmalgamated likelihood estimation with a DL + WGD model
Julia GNU Lesser General Public License v2.1 UpdatedNov 18, 2021 -
transcriptome_WGD_project Public
Forked from li081766/transcriptome_WGD_projectPerl UpdatedSep 25, 2021 -
whaleprep Public
Forked from arzwa/whaleprepNextflow pipeline for preparatory analyses for Whale
Nextflow UpdatedSep 9, 2021 -