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@hihg-um

The John P. Hussman Institute for Human Genomics at The University of Miami Miller School of Medicine

Research sharing and collaboration with the John P. Hussman Institute for Human Genomics
README.md

Challenges in Research Computing

Public data analysis imposes access and reproducibility challenges.

We Categorize:

  • Data (Restricted)
  • Configuration / Meta-Date: (Private): where are the data and how are they indexed
  • Code: (Public): what operations were performed on the data
  • Results: (Global)

Pinned Loading

  1. docker-snptest docker-snptest Public

    Dockerized SNPTEST from https://www.well.ox.ac.uk/~gav/snptest/

    Makefile 1

  2. docker-r docker-r Public

    R build in docker

    Makefile 1

  3. docker-analytics docker-analytics Public

    Dockerized distro-packaged analytics tools

    Makefile 1

Repositories

Showing 10 of 71 repositories
  • PuertoRican_GWAS Public
    hihg-um/PuertoRican_GWAS’s past year of commit activity
    R 1 GPL-2.0 0 0 0 Updated Aug 23, 2024
  • docker-r Public

    R build in docker

    hihg-um/docker-r’s past year of commit activity
    Makefile 0 1 3 1 Updated Aug 19, 2024
  • metasoft Public

    metasoft from http://zarlab.cs.ucla.edu/tag/metasoft/ and now https://hanlab-snu.github.io/METASOFT/

    hihg-um/metasoft’s past year of commit activity
    Java 0 0 0 0 Updated Aug 15, 2024
  • SAIGE Public Forked from saigegit/SAIGE

    Development for SAIGE and SAIGE-GENE(+)

    hihg-um/SAIGE’s past year of commit activity
    C++ 0 GPL-3.0 27 0 0 Updated Aug 14, 2024
  • docker-python Public

    Example python Docker container

    hihg-um/docker-python’s past year of commit activity
    Makefile 0 1 0 1 Updated Jul 21, 2024
  • AnnoPred Public Forked from yiminghu/AnnoPred

    Genetic risk prediction integrating LD and functional annotations

    hihg-um/AnnoPred’s past year of commit activity
    Python 0 MIT 10 0 2 Updated Jul 19, 2024
  • docker-c Public

    Dockerized programs built with c/c++

    hihg-um/docker-c’s past year of commit activity
    Makefile 0 GPL-2.0 1 0 0 Updated Jul 19, 2024
  • rfmix-parser Public

    Region based parser for rfmix2 msp files

    hihg-um/rfmix-parser’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jul 2, 2024
  • Tractor_Tutorial Public

    Tutorial materials to supplement https://github.com/Atkinson-Lab/Tractor-tutorial for the purpose of providing a follow along presentation of the Tractor pipeline

    hihg-um/Tractor_Tutorial’s past year of commit activity
    Shell 0 CC-BY-4.0 0 0 0 Updated Jun 28, 2024
  • docker-java Public
    hihg-um/docker-java’s past year of commit activity
    Makefile 0 1 0 0 Updated Jun 26, 2024
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People

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