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Marvin Wright committed May 10, 2017
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Expand Up @@ -4,7 +4,7 @@ Title: A Fast Implementation of Random Forests
Version: 0.7.2
Date: 2017-04-11
Author: Marvin N. Wright
Maintainer: Marvin N. Wright <[email protected].de>
Maintainer: Marvin N. Wright <marv@wrig.de>
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide association
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1 change: 0 additions & 1 deletion R/csrf.R
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' Case-specific random forests.
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1 change: 0 additions & 1 deletion R/getTerminalNodeIDs.R
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' This function is deprecated.
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1 change: 0 additions & 1 deletion R/holdoutRF.R
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' Grow two random forests on two cross-validation folds.
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1 change: 0 additions & 1 deletion R/importance.R
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' @export
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1 change: 0 additions & 1 deletion R/predict.R
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' Prediction with new data and a saved forest from Ranger.
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' @export
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1 change: 0 additions & 1 deletion R/print.R
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' Print contents of Ranger object.
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1 change: 0 additions & 1 deletion R/ranger.R
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' Ranger is a fast implementation of Random Forest (Breiman 2001) or recursive partitioning, particularly suited for high dimensional data.
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# Germany
#
# http://www.imbs-luebeck.de
# [email protected]
# -------------------------------------------------------------------------------

##' @export
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2 changes: 1 addition & 1 deletion README.md
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![CRAN Downloads month](http://cranlogs.r-pkg.org/badges/ranger?color=brightgreen)
![CRAN Downloads overall](http://cranlogs.r-pkg.org/badges/grand-total/ranger?color=brightgreen)
## ranger: A Fast Implementation of Random Forests
Marvin N. Wright, [email protected]
Marvin N. Wright

### Introduction
ranger is a fast implementation of random forest (Breiman 2001) or recursive partitioning, particularly suited for high dimensional data. Classification, regression, probability estimation and survival forests are supported. Classification and regression forests are implemented as in the original Random Forest (Breiman 2001), survival forests as in Random Survival Forests (Ishwaran et al. 2008). For probability estimation forests see Malley et al. (2012).
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2 changes: 1 addition & 1 deletion cpp_version/src/main.cpp
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <iostream>
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2 changes: 1 addition & 1 deletion cpp_version/src/utility/ArgumentHandler.cpp
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Expand Up @@ -21,9 +21,9 @@ Institut für Medizinische Biometrie und Statistik
Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <fstream>
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2 changes: 1 addition & 1 deletion cpp_version/src/utility/ArgumentHandler.h
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef ARGUMENTHANDLER_H_
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2 changes: 1 addition & 1 deletion src/Data.cpp
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <fstream>
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2 changes: 1 addition & 1 deletion src/Data.h
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef DATA_H_
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2 changes: 1 addition & 1 deletion src/DataChar.cpp
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

// Ignore in coverage report (not used in R package)
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2 changes: 1 addition & 1 deletion src/DataChar.h
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Expand Up @@ -21,9 +21,9 @@ Institut für Medizinische Biometrie und Statistik
Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

// Ignore in coverage report (not used in R package)
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2 changes: 1 addition & 1 deletion src/DataDouble.cpp
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include "DataDouble.h"
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef DATADOUBLE_H_
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2 changes: 1 addition & 1 deletion src/DataFloat.cpp
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

// Ignore in coverage report (not used in R package)
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2 changes: 1 addition & 1 deletion src/DataFloat.h
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

// Ignore in coverage report (not used in R package)
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2 changes: 1 addition & 1 deletion src/DataSparse.cpp
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include "DataSparse.h"
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23562 Lübeck
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef DATASPARSE_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <math.h>
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef FOREST_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <unordered_map>
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef FORESTCLASSIFICATION_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <stdexcept>
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef FORESTPROBABILITY_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <algorithm>
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef FORESTREGRESSION_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <set>
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef FORESTSURVIVAL_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <iterator>
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef TREE_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include <unordered_map>
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#ifndef TREECLASSIFICATION_H_
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Universität zu Lübeck
Ratzeburger Allee 160
23562 Lübeck
Germany
http://www.imbs-luebeck.de
[email protected]
#-------------------------------------------------------------------------------*/

#include "TreeProbability.h"
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