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A simple Ghostscript-based PDF to PDF/A-1B converter.

Shell 77 16 Updated Jun 27, 2021

PDFsam, a desktop application to split, merge, mix, rotate PDF files and extract pages

Java 3,499 345 Updated Dec 16, 2024

Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support

Python 36 7 Updated Jan 31, 2024

Official repo for par2cmdline and libpar2

C++ 732 76 Updated Mar 12, 2024

EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment

HTML 52 6 Updated May 25, 2023

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

C++ 125 33 Updated Jun 21, 2024

A tabbed file manager with Add-on support

C++ 993 105 Updated Dec 23, 2024

A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions

R 38 4 Updated Jul 5, 2022

Blazing 💥 fast terminal-ui for git written in rust 🦀

Rust 18,792 576 Updated Dec 30, 2024

A small utility to modify the dynamic linker and RPATH of ELF executables

C 3,647 488 Updated Nov 18, 2024
TypeScript 23 7 Updated Aug 1, 2023

Module for creating and displaying Toast Notifications on Microsoft Windows 10.

PowerShell 1,453 126 Updated Sep 3, 2024

A fast multi-threaded k-mer counter

C++ 477 137 Updated Mar 20, 2024

Code examples of fast and simple k-mer counters for tutorial purposes

C++ 167 15 Updated Mar 10, 2020

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 1,974 335 Updated Nov 28, 2024

tandem repeat finding from erroneous long reads

C 14 5 Updated Oct 26, 2021

Long read / genome alignment software

C 266 23 Updated Nov 5, 2024
R 2 Updated Aug 4, 2014
Python 16 6 Updated Apr 25, 2017

Methylated DNA motif discovery tool

Python 1 2 Updated Jul 12, 2019

Disk encryption with strong security based on TrueCrypt

C 7,077 964 Updated Dec 28, 2024

A python script wrapper for git-archive that archives a git superproject and its submodules, if it has any. Takes into account .gitattributes

Python 379 81 Updated Aug 4, 2023

Fast algorithm for leverage score sampling, low rank (kernel) matrix factorization and PCA

Python 16 2 Updated Oct 28, 2023

Windows system utilities to maximize productivity

C# 113,079 6,658 Updated Dec 30, 2024

A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning …

C++ 16,837 3,839 Updated Dec 30, 2024

ThunderSVM: A Fast SVM Library on GPUs and CPUs

C++ 1,574 218 Updated Apr 1, 2024

Large-scale, multi-GPU capable, kernel solver

Python 184 22 Updated Jul 16, 2024

Global alignment and alignment extension

C 128 25 Updated Jun 27, 2023

A fast K-mer counter for high-fidelity shotgun datasets

C 121 16 Updated Dec 30, 2024

a long read simulator that can imitate many types of read problems

Python 189 22 Updated Jul 22, 2024
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