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Commits on Jul 31, 2023

• Added the feature to show isoforms and exons as tracks with the button "Add Track" in the "Sequences & Annotations" window via the menu "Analysis > Sequences & Annotations". Also displayed pathogen…

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Commits on Apr 10, 2023

• Improved the use of iCn3D in Jupyter Notebook by making the dialogs closable, and adding DelPhi potential and mutation analysis; added DelPhi potential as one option in the Virtual Reality (VR) vie…

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Commits on Aug 16, 2022

• Enabled users to switch between "All Menus" and "Simple Menus", or customize the menus and save them in a file to be loaded by others. The customized menus are sticky and saved in cache.

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Commits on Jul 27, 2022

• jQuery UI was upgraded from version 1.12.1 to 1.13.2.

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Commits on Jun 6, 2022

• Users now can have Virtual Reality (VR) view on any iCn3D display; enabled to view multiple seqeunce alignment (MSA) instead of pairwise alignment; changed the tools in toolbar from buttons to icon…

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Commits on May 12, 2022

• Fixed a bug in the dynamic VAST alignment in iCn3D with the menu "File > Realign Selection > by Structure Alignment".

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Commits on Apr 15, 2022

• Users can input multiple PDB, MMDB, or AlphaFold IDs with the menu "File > Retrieve by ID > MMDB or AlphaFold IDs". Users can also load multiple PDB files at the same time with the menu "File > Ope…

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Commits on Feb 7, 2022

• Enabled to show mutations for AlphaFold structures in the menu "Analysis > Mutation". Fixed the 2D interaction network view of mutations.

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Commits on Aug 27, 2021

• AlphaFold predicted structures can be viewed at iCn3D with the menu "File > Retrieve by ID > AlphaFold UniProt ID".

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Commits on Aug 20, 2021

• Dynamically generate "2D Cartoon" in the chain, domain, or secondary structure levels for selected residues in the menu "Analysis". The cartoons are draggable and clickable.

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Commits on Jul 21, 2021

• Changed the default view of glycan cartoons as hidden. Users can change the default at "Style > Prefereces > Show Glycan Cartoon" for your browser.

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Commits on Jul 14, 2021

• Now users can choose the color gradient and show the color legend for the "Custom Color" button in the Sequences & Annotations window.

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Commits on Jun 25, 2021

• Enabled to set the URL parameter "menumode" to "1" to show icons for those menus requiring internet access or license.

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Commits on May 3, 2021

• iCn3D version 3.0.0 was converted to ES6 with classes and is available in npm with the package "icn3d". Users can use npm to install icn3d and generate Node.js scripts by calling icn3d functions. A…

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Commits on Mar 16, 2021

• Changed the default 3D view (https://www.ncbi.nlm.nih.gov/Structure/icn3d/index.html) from the basic view (https://www.ncbi.nlm.nih.gov/Structure/icn3d/simple.html) to the advanced view (https://ww…

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• Changed the default 3D view (https://www.ncbi.nlm.nih.gov/Structure/icn3d/index.html) from the basic view (https://www.ncbi.nlm.nih.gov/Structure/icn3d/simple.html) to the advanced view (https://ww…

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Commits on Nov 24, 2020

• Users now can alternate wild type and mutant, and their interaction networks in 3D for each SNP/ClinVar in the "Sequences & Annotation" window.

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Commits on Aug 3, 2020

• Moved "H-Bonds & Interactions" to "Analysis" menu and merged "Windows" menu with "Analysis" menu. Changed the default dialog color to blue. Users can change it at the menu "Style > Dialog Color".

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• Moved "H-Bonds & Interactions" to "Analysis" menu and merged "Windows" menu with "Analysis" menu. Changed the default dialog color to blue. Users can change it at the menu "Style > Dialog Color".

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Commits on Jul 20, 2020

• Generated icn3dpy (the Jupyter Notebook widget of iCn3D) at https://pypi.org/project/icn3dpy; added "2D Interaction Map" in the menu "View > H-Bonds & Interactions"; added the shrink/expand icon in…

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Commits on Jun 15, 2020

• Users can now show "2D Interaction Graph" and also "Highlight Interactions in Table" in the menu "View > H-Bonds & Interactions". Users can also replay the share link step by step to learn how to g…

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Commits on Jun 6, 2020

• Added halogen bonds, pi-cation, and pi-stacking interactions in the menu "View > H-Bonds & Interaction" and showed the interactions in sorted tables.

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Commits on May 29, 2020

• Added the following features: 1. save contents in any dialog/window using the save icon next to the closeicon, 2. set names for each tab/window using the menu "Windows > Your Note / Window Title", …

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Commits on May 21, 2020

• Enabled to show interactions using force-directed graph in the menu 'View > H-Bonds & Interactions > Force-Directed Graph'. Enabled to calculate Solvent Accessible Surface Area (SASA) in the menu '…

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Commits on Aug 21, 2019

• Enabled the mobile style menu with the URL parameter "mobilemenu=1"

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Commits on Aug 2, 2019

• Fixed the effect of Fog on sticks and spheres

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• Fixed the effect of Fog on sticks and spheres

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Commits on Oct 18, 2018

• Added set operations (union,intersection, exclusion) in 'Defined Sets'; added buttons 'Helix Sets' and 'Sheet Sets' in the 'Sequences and Annotations' window to define helix sets and sheet sets in …

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Commits on Jul 30, 2018

• improved the 3D display of ribbons

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Commits on Apr 18, 2018

• enable to export STL and VRML filesfor 3D printing, add annotations such as SNPs, domains, functional sites, etc

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