hmfeng
Follow
Stars
A MATLAB library/toolbox providing access to image registration suitable for use with medical images.
Behavioral Observation Research Interactive Software
A deep learning framework for multi-animal pose tracking.
Zotero plugin to automatically move attachments and link them
Python script for importing Neuralynx data files
A general framework for interpreting wide-band neural activity
PyTorch code and models for the DINOv2 self-supervised learning method.
EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
Instructions for using deeplabcut (v2.1.7) in a GPU cluster environment (specifically Bridges GPU-AI node at PSC)
Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
MATLAB code for local field potential analysis
OpenResume is a powerful open-source resume builder and resume parser. https://open-resume.com/
The interactive graphing library for Python ✨
Calibrated inference of spiking from calcium ΔF/F data using deep networks
Constrained Nonnegative Matrix Factorization for microEndoscopic data
ezTime — pronounced "Easy Time" — is a very easy to use Arduino time and date library that provides NTP network time lookups, extensive timezone support, formatted time and date strings, user even…
Free, platform independent, behavior tracking software.
Neurodata Without Borders extension for metadata relevant for miniscope acquisition
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
miniscope analysis pipeline with interactive visualizations