A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

Comparative Genomics Lab - Workshop on Genomics

tutorial on pggb

Materials for practical "Introduction to R" tought at Workshop on Genomics in Český Krumlov

basic walk-throughs for alignment and variant calling from NGS sequencing data

Workshop on Genomics - Genomics Adventure

Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV

NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities is available in sourceforge (https://sourceforge.net/p/ngsep…

Python code to apply the PAM50 gene normalization as in PMID 38546612

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

App that uses R shiny to build an interactive volcano plot

A website that displays hundreds of R charts with their code

A guide to reading scientific papers

scRNAseq analysis notes from Ming Tang

Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts

Ridge regression with a fast implementation of statistical significance test

Workshop materials for SFSU SCIP 2022.

scripts and notebooks from sanbomics

Collection of bioinformatics training materials

A Microsoft Word add-in for statchecking your manuscript.

R package

DE analysis module for Week3

Collection of Python classes

R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.