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  • viraldrug Public

    C 1 Updated Nov 18, 2024
  • scanpy Public

    Forked from scverse/scanpy

    Single-cell analysis in Python. Scales to >1M cells.

    Python BSD 3-Clause "New" or "Revised" License Updated May 15, 2024
  • dictys Public

    Forked from pinellolab/dictys

    Context specific and dynamic gene regulatory network reconstruction and analysis

    Python GNU Affero General Public License v3.0 Updated Mar 7, 2024
  • paml documentation and tutorials

    HTML GNU General Public License v3.0 Updated Jun 30, 2023
  • handson-ml3 Public

    Forked from ageron/handson-ml3

    A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

    Jupyter Notebook Apache License 2.0 Updated Oct 20, 2022
  • Repo for DKU AlphaFold Research Project

    Jupyter Notebook Updated Aug 11, 2022
  • Code Repository for Machine Learning with PyTorch and Scikit-Learn

    Jupyter Notebook MIT License Updated Jul 29, 2022
  • handson-ml2 Public

    Forked from ageron/handson-ml2

    A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2--2019

    Jupyter Notebook Apache License 2.0 Updated Jul 6, 2022
  • generalCHAB Public

    project to compare different algal composition and systems operation

    GNU General Public License v3.0 Updated Jun 17, 2022
  • STREAM Public

    Forked from pinellolab/STREAM

    STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

    Jupyter Notebook GNU Affero General Public License v3.0 Updated Dec 18, 2021
  • vamb Public

    Forked from RasmussenLab/vamb

    Variational autoencoder for metagenomic binning

    Python MIT License Updated Jan 14, 2021
  • Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

    Updated Jan 5, 2021
  • functional metabolic pathways for cyanobacterial blooms

    Updated May 12, 2020
  • 李宏毅《线性代数》笔记,在线阅读地址 https://datawhalechina.github.io/leela-notes

    GNU General Public License v3.0 Updated Sep 1, 2019
  • 台湾大学李宏毅老师机器学习

    Jupyter Notebook Updated Jul 15, 2019
  • CyanoHABs Public

    comparative genomics of blooming cyanobacteria vs non-blooming species

    1 1 Updated May 7, 2019
  • NTU ML2017 Spring and Fall Homework Hung-yi_Li 李宏毅老师 机器学习课程作业

    Jupyter Notebook Updated Mar 15, 2019
  • WITOD Public

    Forked from johncava/WITOD

    A Tool for Within-Taxon Operational Taxonomic Unit (OTU) Diversity

    Python Updated Dec 27, 2018
  • kleuren Public

    Forked from Colelyman/kleuren

    Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees

    C++ MIT License Updated Sep 20, 2018
  • microbiome Public

    Shell Updated Sep 11, 2018
  • In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!

    Python MIT License Updated Apr 1, 2018
  • the mian repository for e.coli multiple growth conditions

    HTML Updated Mar 23, 2018
  • A pipeline for analyzing metagenomic microbiome datasets

    Perl Updated Jan 15, 2018
  • ITIS Public

    Forked from Chuan-Jiang/ITIS

    tool to Identify TE Insertion Sites in genome

    Perl Updated Dec 24, 2017
  • pymegan Public

    Forked from etheleon/pymegan

    Python package and wrapper around MEGAN6 CE's blast2lca

    Perl MIT License Updated Aug 3, 2017
  • cyanonets Public

    metabolic networks of select booming and non-blooming cyanobcteria

    Updated Jul 13, 2017
  • Metagenomics Workshop

    Python Updated Nov 23, 2016
  • xml_models Public

    Updated Mar 18, 2016
  • metabolic network model xml files

    Updated Mar 8, 2016
  • COnstraint-Based Reconstruction and Analysis toolbox

    MATLAB GNU General Public License v3.0 Updated Feb 4, 2016