🦠 Interactive dashboard for real-time recording of COVID-19 outbreak in Japan

🐦 spideog - Command line utility for Kraken2 reports.

ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

Software for prediction of plasmid sequences in metagenomic assemblies

Prodigal Gene Prediction Software

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Ultra-fast and memory-efficient (meta-)genome assembler

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

This is the source code for multisamples ARGs profiling using SARG2.0 database

A comprehensive metagenomic pipeline for airborne ARGs (Antibiotic Resistance Genes) in UWTP (Urban wastewater Treatment Plant)

Metagenomics analysis pipeline

Contains a fasta format database of a large variety of mobile genetic elements and an annotation file