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Include 'unistd.h' to explicitly declare 'getopt'
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mfcovington committed Nov 15, 2015
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#include <stdlib.h>
#include <limits.h>
#include <string.h>
#include <unistd.h>
#include "bwa.h"
#include "bwamem.h"
#include "kseq.h"
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