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Commits on Jun 27, 2017

• Added option to write output to file

  

  José Manuel Abuín Mosquera

  authored and

  jmarshall

  committed
  d28da05

Commits on Jun 26, 2017

• Prevent Clang warnings on abs() and fabs() calls

  Show description for ab3a92b
  jmarshall

  committed
  ab3a92b

Commits on May 12, 2017

• Fixed BWTIncFree() memory leaks

  Show description for 6a5caf7
  

  GwenIves

  authored and

  jmarshall

  committed
  6a5caf7

Commits on May 10, 2017

• Only realloc(pac,...) if it needs to be made larger

  Show description for 1972a97
  jmarshall

  committed
  1972a97

Commits on Apr 25, 2017

• Add missing <stdint.h> include

  Show description for beff2e2
  jmarshall

  committed
  beff2e2

• Replace u_int32_t by the more common uint32_t

  Show description for af87825
  jmarshall

  committed
  af87825

Commits on May 31, 2016

• r1142: added option -5 for Hi-C data

  lh3

  committed
  f123871

• Release bwa-0.7.15-r1140

  lh3

  committed
  850dd81

Commits on May 20, 2016

• r1138: fixed typo in insert size estimate (lh3#65)

  Show description for 58bcc25
  lh3

  committed
  58bcc25

Commits on May 4, 2016

• Release 0.7.14-r1136

  lh3

  committed
  5db0c36

Commits on May 3, 2016

• r1134: use AH:* instead of AH:Y

  lh3

  committed
  7ec3261

Commits on Apr 28, 2016

• r1130: changed "ah" to "AH"

  lh3

  committed
  3c03825

Commits on Feb 23, 2016

• Released bwa-0.7.13 (r1126)

  lh3

  committed
  9e5852c

• use /usr/env/perl

  lh3

  committed
  b94a78a

• added comment

  lh3

  committed
  f1ce529

• Port lh3#48 to the dev branch

  lh3

  committed
  11437a1

Commits on Feb 13, 2016

• moved indexing to libbwa

  lh3

  committed
  9a82834

Commits on Feb 1, 2016

• r1102: resumed versioning

  lh3

  committed
  86170ff

• updated GRCh38 download link

  lh3

  committed
  ede7b09

• a typo in fastmap command-line prompt

  lh3

  committed
  1e6a10c

• use /usr/bin/env perl

  lh3

  committed
  6f0ea0b

Commits on Jan 27, 2016

• integer overflow on indexing

  lh3

  committed
  fdf4700

• make kthread.c compiled with g++

  lh3

  committed
  c819643

• removed the pbread mode

  Show description for 1247dc2
  lh3

  committed
  1247dc2

Commits on Jan 26, 2016

• Merge branch 'dev' of github.com:lh3/bwa into dev

  lh3

  committed
  616a534

• updated dependencies

  lh3

  committed
  feeb41f

• ropebwt2 for bwt construction

  lh3

  committed
  be2020c

Commits on Nov 15, 2015

• Merge pull request lh3#47 from mfcovington/feature/fix-maxk-error

  Show description for e3ea2a8
  lh3

  committed
  e3ea2a8

• Include 'unistd.h' to explicitly declare 'getopt'

  mfcovington

  committed
  c2efebe

Commits on Aug 27, 2015

• fixed a bug in reverse-complement

  lh3

  committed
  6c668d3

Commits on Mar 25, 2015

• r1044: fixed an out-of-order bug in kthread

  lh3

  committed
  3ae437a

Commits on Feb 8, 2015

• added maxk: max unique k-mer at each position

  lh3

  committed
  163f949

Commits on Dec 29, 2014

• changed download link: 0.7.11 => 0.7.12

  lh3

  committed
  1f99921

Commits on Dec 28, 2014

• Released 0.7.12

  lh3

  committed
  8211fbc

Commits on Dec 24, 2014

• r1038: wrong 0x100|0x800 flags in PE mode

  lh3

  committed
  e746a3e

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