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  • picard Public

    Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java MIT License Updated Sep 1, 2019

  • hts-specs Public

    Forked from samtools/hts-specs

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX Updated Aug 31, 2019

  • bwa Public

    Forked from lh3/bwa

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    C GNU General Public License v3.0 Updated Jul 28, 2019

  • deepvariant Public

    Forked from google/deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    Python BSD 3-Clause "New" or "Revised" License Updated Jun 4, 2019