Stars
Annotates variants in MAF with OncoKB annotation.
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
A public reference implementation of HL7 FHIR Genomics Operations (http://build.fhir.org/ig/HL7/genomics-reporting/operations.html)
Workflow for processing Illumina sequencing runs for ancient human DNA
This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.
dnanexus-rnd / multi-tabix
Forked from cschin/multi-tabixmulti_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
Accelerated genomics workflows in the Workflow Description Language
Models and examples built with TensorFlow
Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer
Django-based web application that offers AI-generated movie quizzes powered by ChatGPT API.
The flare program performs local ancestry inference
[in development] Proof-of-Concept variation translation, validation, and registration service
A curated list of pretrained sentence and word embedding models
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Extensible specification for representing and uniquely identifying biological sequence variation
Differential gene expression analysis on RNA-seq data
R package for performing 2-sample MR using MR-Base database
An R package for creating ggplot2 based miami plots.