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Annotates variants in MAF with OncoKB annotation.

Python 126 62 Updated Oct 3, 2024

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

C++ 193 55 Updated Nov 29, 2024

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

Jupyter Notebook 142 49 Updated Jul 30, 2024

A public reference implementation of HL7 FHIR Genomics Operations (http://build.fhir.org/ig/HL7/genomics-reporting/operations.html)

Python 29 18 Updated Dec 24, 2024

Tools test whether admixture occurred and more

C 183 65 Updated Sep 6, 2024

Workflow for processing Illumina sequencing runs for ancient human DNA

Python 18 5 Updated Oct 29, 2020

This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.

Java 18 2 Updated Jul 11, 2024

multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.

Rust 6 Updated Jan 7, 2022

The complete sequence of a human genome

929 99 Updated Nov 19, 2024

Accelerated genomics workflows in the Workflow Description Language

WDL 30 5 Updated Apr 2, 2024

FASTQ compression

C 123 21 Updated Aug 15, 2023

Models and examples built with TensorFlow

Python 77,292 45,727 Updated Dec 27, 2024

Keep track of and manage analyses

Python 6 2 Updated Dec 13, 2024

Predicting multiple cancer phenotypes based on somatic genomic alterations via the genomic impact transformer

Python 77 9 Updated Jan 13, 2020

Django-based web application that offers AI-generated movie quizzes powered by ChatGPT API.

Python 6 1 Updated Apr 3, 2023
Python 228 14 Updated May 22, 2023

The flare program performs local ancestry inference

Java 33 7 Updated Oct 30, 2024

[in development] Proof-of-Concept variation translation, validation, and registration service

Python 13 6 Updated Dec 11, 2024
Jupyter Notebook 3 1 Updated Jul 30, 2024

A curated list of pretrained sentence and word embedding models

Python 2,238 261 Updated Apr 23, 2021

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Python 3,352 659 Updated Feb 7, 2024

RNA editing tests

R 16 4 Updated Sep 24, 2020

Extensible specification for representing and uniquely identifying biological sequence variation

Jupyter Notebook 82 35 Updated Dec 23, 2024

Source code of FUMA GWAS web application

Blade 54 23 Updated Nov 17, 2023

Annotated data.

Python 588 157 Updated Dec 23, 2024

Differential gene expression analysis on RNA-seq data

Jupyter Notebook 11 5 Updated Apr 26, 2024

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

R 514 48 Updated Feb 24, 2024

R package for performing 2-sample MR using MR-Base database

R 450 177 Updated Sep 26, 2024

An R package for creating ggplot2 based miami plots.

R 16 9 Updated Mar 6, 2024

corrplot of LDSC genetic correlation results

R 48 11 Updated Mar 16, 2022
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