This project focuses on aligning post-QC sequencing reads to the GRCh38 human genome using BWA-MEM2 and processing the results with SAMtools. The project emphasizes resource optimization in high-pe…

This project aims to perform robust ancestry inference by analyzing population structure using Admixture and PLINK tools on an HPC cluster. The workflow encompasses efficient genomic data processin…

This streamlined approach provides researchers and clinicians with powerful tools to explore pharmacogenomic patterns, bridging the gap between genomics and personalized medicine. Key outputs inclu…

This project extracts genomic variants from VCF files to compute Polygenic Risk Scores (PRS) for African populations. Using bcftools and PLINK2, filtered variants are matched to a coronary artery d…

This project analyzes genetic variants to identify sickle cell (HBB rs334) and CFTR pathogenic carriers using 1000 Genomes data. It combines Python, R, bcftools, and snpEff for filtering, annotati…

This project focuses on identifying genomic variants, such as SNPs and short indels, using high-throughput sequencing data. Building on aligned reads from Project 2, the workflow involves quality a…

This repository contains the starter notebook for Project 1 focused on accessing and performing quality control (QC) on exome sequencing data from the 1000 Genomes Project. The project includes wor…

Config files for my GitHub profile.