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Update README.md
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ManuSetty authored May 24, 2019
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Expand Up @@ -31,7 +31,7 @@ A tutorial on Palantir usage and results visualization for single cell RNA-seq d


#### Processed data and metadata
```scanpy anndata``` objects are available for download for the three replicates: [Rep1](https://s3.amazonaws.com/dp-lab-data-public/palantir/human_cd34_bm_rep1.h5ad), [Rep2](https://s3.amazonaws.com/dp-lab-data-public/palantir/human_cd34_bm_rep2.h5ad), [Rep3](https://s3.amazonaws.com/dp-lab-data-public/palantir/human_cd34_bm_rep3.h5ad)
```scanpy anndata``` objects are available for download for the three replicates generated in the manuscript: [Rep1](https://s3.amazonaws.com/dp-lab-data-public/palantir/human_cd34_bm_rep1.h5ad), [Rep2](https://s3.amazonaws.com/dp-lab-data-public/palantir/human_cd34_bm_rep2.h5ad), [Rep3](https://s3.amazonaws.com/dp-lab-data-public/palantir/human_cd34_bm_rep3.h5ad)

Each object has the following elements
* `.X`: Filtered, normalized and log transformed count matrix
Expand All @@ -50,6 +50,9 @@ Each object has the following elements
* `.uns['mast_diff_res_columns']`: Column names for the differential expression results


#### Comparison to trajectory detection algorithms
Notebooks detailing the generation of results comparing Palantir to trajectory detection algorithms are available [here](https://github.com/dpeerlab/Palantir/blob/master/notebooks/comparisons)


#### Citations
Palantir manuscript is available from [Nature Biotechnology](https://www.nature.com/articles/s41587-019-0068-4). If you use Palantir for your work, please cite our paper.
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