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Commits on Jan 17, 2014

• Add permissions attribute to manifest of goby and batik before signing for jws-deploy

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Commits on Sep 20, 2013

• Reverse equals check.

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Commits on Jul 17, 2013

• Merge pull request igvteam#51 from broadinstitute/GeneTrackRemoval

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• Merge pull request igvteam#52 from broadinstitute/CancelLoaders

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Commits on Jul 9, 2013

• Merge pull request igvteam#54 from sjackman/master

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Commits on Jun 27, 2013

• Merge pull request igvteam#53 from joshuagould/master

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Commits on May 28, 2013

• Merge pull request igvteam#47 from broadinstitute/IgvToolsStdout

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Commits on May 21, 2013

• Merge pull request igvteam#46 from broadinstitute/IntervalClass

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Commits on May 18, 2013

• Change file.toPath -> getAbsolutePath (former doesn't exist on Java 6 I think)

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Commits on May 13, 2013

• Ignore failing sql test

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Commits on Apr 26, 2013

• Ignore strandedness in sashimi plot

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Commits on Apr 19, 2013

• Change log.info -> log.debug in TDF reading sections

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• Add IGVSeekableHTTPStream which calls to IGVUrlHelper

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Commits on Apr 18, 2013

• Merge pull request igvteam#41 from broadinstitute/Javadoc2

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Commits on Apr 9, 2013

• Adjust test target dependencies

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Commits on Apr 6, 2013

• Only show consensus sites

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• Update na12878kb.jar

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• Add SAMFileReader.setDefaultValidationStringency(ValidationStringency.SILENT)

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• Change vcf library to that in picard, variant-1.88.jar

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Commits on Apr 4, 2013

• Merge pull request igvteam#39 from broadinstitute/JSON

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Commits on Mar 19, 2013

• Fix incorrect ReferenceFrame scaling based on window resizing

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Commits on Mar 18, 2013

• Merge pull request igvteam#35 from broadinstitute/Sashimi2

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Commits on Mar 7, 2013

• Fix typo in igv.command, missing comment character

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Commits on Feb 4, 2013

• Merge pull request igvteam#30 from broadinstitute/ViewEvents

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Commits on Feb 1, 2013

• Merge pull request igvteam#31 from CampagneLaboratory/master

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Commits on Jan 26, 2013

• Update soft references when record/readString is reloaded

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Commits on Jan 25, 2013

• Change variant review track name to NA12878 KB

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• Get consensus sites in VariantReviewSource, instead of all calls

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• Remove ant FileUtils.isAbsolutePath usage, shouldn't depend on ant

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Commits on Jan 14, 2013

• Merge pull request igvteam#29 from bbglab/master

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Commits on Jan 9, 2013

• Merge pull request igvteam#27 from broadinstitute/SessionIO

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Commits on Dec 24, 2012

• Copy launch scripts to dist dir as part of build

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• Make AsciiEncoder behavior not platform-dependent

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Commits on Nov 27, 2012

• Use pluginSpecReader.getToolPath, as we should, so we get tool path either from XML spec or from preferences.

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Commits on Oct 29, 2012

• Make GenomeSelectionDialog text non-editable (should never have been editable). Add ellipses to Genome menu items because they open dialogs

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