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j23414 Follow

Overview Repositories 114 Projects 0 Packages 0 Stars 129

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j23414

Jennifer Chang j23414

Bioinformatician Enjoys crafting pipelines and reducing tedium

68 followers · 69 following

Fred Hutchinson
Seattle, WA
http://j23414.github.io/
https://orcid.org/0000-0002-8381-3765
in/jenchang212

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Overview Repositories 114 Projects 0 Packages 0 Stars 129

Overview
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All R Perl Shell Python HTML TypeScript JavaScript Nextflow TeX Rust WDL CAP CDS Jupyter Notebook Ruby Dockerfile Objective-C C++

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test_dir Public

test Delete November 28th

R Updated Dec 16, 2024
basic-phylogenetic-pipeline Public

Almost always my initial steps for looking at a pathogen

Perl Updated Dec 3, 2024
generated-reports Public

R Updated Nov 18, 2024
j23414.github.com Public

Online programming portfolio

Updated Nov 17, 2024
lassa_s_reference Public

Attempt an S reference

Shell Updated Nov 17, 2024
japanese-encephalitis-virus Public

Python Updated Nov 17, 2024
basic_website Public

Review html, css, javascript so I understand underlying tech behind hugo, jekyll, etc

Updated Oct 21, 2024
reaction Public

web dev / react

HTML Updated Oct 16, 2024
react-gh-pages Public
Forked from gitname/react-gh-pages

Deploying a React App (created using create-react-app) to GitHub Pages

TypeScript Updated Sep 16, 2024
validate_titer_parse Public

Temporary repo to document validation

Python Updated Aug 16, 2024
review_alignment_scores Public

notes

Updated Aug 7, 2024
buildings Public

Python Updated Jul 3, 2024
patch_practice Public

JavaScript Updated Jul 1, 2024
representative_tree Public

Full tree then subsample

Python Updated Jun 25, 2024
vscode-guide Public

Updated Jun 18, 2024
test_minimal_dataset Public

test different layers

Updated Apr 16, 2024
test_convert_v3 Public

Test conversion of to v3

Updated Mar 7, 2024
compare_workflows Public

Compare snakemake with nextflow and CWL, probably should combine this with desc_workflow repo

snakemake nextflow makefile wdl cwl

Nextflow 2 Updated Feb 29, 2024
flu_forecasting_reproducibility Public

Reproduce analysis with recent data

Updated Nov 15, 2023
discussion-1874 Public
Forked from heike/discussion-1874

TeX Updated Oct 8, 2023
nextclade_dengue Public

Attempt to create a nextclade_dengue dataset

Shell MIT License Updated Sep 27, 2023
pdm1957 Public

Pandemic of 1957

R Updated Sep 27, 2023
sir_models Public

Test mathjax

Updated Jul 19, 2023
pathogen_nf Public

Generic calls to existing nextstrain pathogen pipelines

Nextflow Updated Jul 7, 2023
mini_nf Public

Draft options for nextflow modularization of nextstrain

Nextflow Updated Jun 30, 2023
test_snakemake_6 Public

Python Updated Jun 22, 2023
dotfiles Public

Shell Updated Jun 16, 2023
WNV_tree Public

Glance at WNV trees published in literature

Updated Jun 13, 2023
.github Public

Diving into history

Updated Jun 5, 2023
nextclade_template_nf Public

Draft of creating a nextclade dataset

Nextflow Updated May 14, 2023

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Jennifer Chang j23414

Achievements

Achievements

test_dir Public

basic-phylogenetic-pipeline Public

generated-reports Public

j23414.github.com Public

lassa_s_reference Public

japanese-encephalitis-virus Public

basic_website Public

reaction Public

react-gh-pages Public

validate_titer_parse Public

review_alignment_scores Public

buildings Public

patch_practice Public

representative_tree Public

vscode-guide Public

test_minimal_dataset Public

test_convert_v3 Public

compare_workflows Public

flu_forecasting_reproducibility Public

discussion-1874 Public

nextclade_dengue Public

pdm1957 Public

sir_models Public

pathogen_nf Public

mini_nf Public

test_snakemake_6 Public

dotfiles Public

WNV_tree Public

.github Public

nextclade_template_nf Public