Skip to content

Commit

Permalink
Update NEWS to mention SAM speed & threading.
Browse files Browse the repository at this point in the history
  • Loading branch information
jkbonfield committed Dec 2, 2019
1 parent 4c82d2c commit 7d08dc8
Showing 1 changed file with 4 additions and 0 deletions.
4 changes: 4 additions & 0 deletions NEWS
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,10 @@ Changes affecting the whole of samtools, or multiple sub-commands:
due to file format limitations, data with large reference positions
must use the SAM format. (#1107; #1117)

* Improved the efficiency of reading and writing SAM format data by 2 fold
(single thread). This is further improved by the ability to use multiple
threads, as previously done with BAM and CRAM.

* samtools can now write BGZF-compressed SAM format. To enable this,
either save files with a '.sam.gz' suffix, or use '--output-fmt sam.gz'.

Expand Down

0 comments on commit 7d08dc8

Please sign in to comment.