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Commits on Sep 17, 2018

• removed a useless dependency (not in repo)

  lh3

  committed
  8b12da8

Commits on Sep 2, 2018

• r829: replaced musl's getopt with ketopt

  lh3

  committed
  7998fe9

Commits on Jul 14, 2018

• write hits to tmp files (unfinished)

  lh3

  committed
  1a55227

Commits on Jun 20, 2018

• r794: fixed a bug in seed filtering

  lh3

  committed
  66674af

Commits on Jun 19, 2018

• r792: fixed -Wextra warnings and resolved lh3#184

  lh3

  committed
  7e6e8ca

• added support for 64 bit ARM architectures

  

  hasindu2008

  authored and

  lh3

  committed
  99dcd75

Commits on Feb 26, 2018

• use SSE compiler flags more precisely (lh3#127)

  lh3

  committed
  a22ebb9

Commits on Feb 1, 2018

• Release minimap2-2.8 (r672)

  lh3

  committed
  53ce317

Commits on Jan 26, 2018

• put option operations in another file

  lh3

  committed
  123bc1d

Commits on Dec 31, 2017

• added PHONY and comments to makefile

  lh3

  committed
  6b0d3c1

Commits on Dec 15, 2017

• added support for arm neon

  hasindu2008

  committed
  8995e2e

Commits on Dec 13, 2017

• added esterr.o dependencies

  lh3

  committed
  ae85dcd

Commits on Dec 6, 2017

• r607: estimate sequence divergence

  Show description for 704ff9f
  lh3

  committed
  704ff9f

Commits on Oct 5, 2017

• r479: a bit code cleanup

  lh3

  committed
  e0baf1a

Commits on Sep 26, 2017

• r440: better chain filtering for PE reads

  lh3

  committed
  55d1e4f

Commits on Sep 17, 2017

• try python build again

  lh3

  committed
  e9e86f5

• this is embarrassing: rename again to mappy

  lh3

  committed
  d5012a1

• renamed module name from minimap2 to mmappy

  Show description for 28fd3d6
  lh3

  committed
  28fd3d6

Commits on Sep 16, 2017

• fixed a bug on rev strand; added example

  lh3

  committed
  10bd407

• minor

  lh3

  committed
  7e34bea

Commits on Sep 4, 2017

• r338: portable CPU dispatch, which is the default

  Show description for 46e8b6a
  lh3

  committed
  46e8b6a

Commits on Sep 3, 2017

• r337: support CPU dispatch for gcc-4.8+

  Show description for 3c997ca
  lh3

  committed
  3c997ca

Commits on Sep 2, 2017

• for better windows compatibility

  lh3

  committed
  0a3ebdc

Commits on Sep 1, 2017

• r315: added getopt from musl

  lh3

  committed
  eccdb3a

Commits on Aug 12, 2017

• separate out spliced alignment; not right yet

  lh3

  committed
  61eef05

Commits on Aug 10, 2017

• r281: don't open long gaps on query

  lh3

  committed
  163fa36

Commits on Jul 30, 2017

• r229: a new way to prevent out-of-band backtrack

  lh3

  committed
  5934d68

Commits on Jul 29, 2017

• r227: use local alignment for INV alignment

  lh3

  committed
  d08b7a0

Commits on Jul 18, 2017

• update dependency; delete minimap2-lite on clean

  lh3

  committed
  947cf16

• migrated minimap/example.c here.

  lh3

  committed
  293a704

• use -msse4 by default, not -march

  lh3

  committed
  a1addb2

Commits on Jul 8, 2017

• r159: use two-piece gap penalty

  lh3

  committed
  cc554ae

Commits on Jul 3, 2017

• r148: revamped regs handling after cigar

  lh3

  committed
  2e4fd9f

Commits on Jun 29, 2017

• code refactoring for mm_reg1_t

  lh3

  committed
  ecedfe5

• merge into map.c

  lh3

  committed
  17944a7

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