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Commits on Jul 8, 2019

• Fix memory leak in mappy.aligner.map.

  

  marcus1487

  authored and

  lh3

  committed
  238b6bb

Commits on Jun 7, 2019

• test if index is built for lh3#413

  lh3

  committed
  03dc8d5

Commits on May 5, 2019

• Release minimap2-2.17 (r941)

  lh3

  committed
  7bc87b4

Commits on May 1, 2019

• r937: enlarge mm_mapopt_t::flag to 64 bits

  lh3

  committed
  97f67a2

• potentially fix issue lh3#372

  Show description for 1895555
  lh3

  committed
  1895555

Commits on Apr 28, 2019

• implemented in exts; testing is the next

  lh3

  committed
  be171aa

Commits on Feb 28, 2019

• Release minimap2-2.16 (r922)

  lh3

  committed
  6b391e3

Commits on Feb 27, 2019

• r917: added --max-chain-iter to avoid worst case

  Show description for d431dc0
  lh3

  committed
  d431dc0

Commits on Jan 29, 2019

• added mappy.Aligner.seq_names to return seq names

  Show description for aaf3233
  lh3

  committed
  aaf3233

Commits on Jan 10, 2019

• Release minimap2-2.15 (r905)

  lh3

  committed
  c404f49

Commits on Nov 6, 2018

• Release minimap2-2.14 (r883)

  lh3

  committed
  59f23f7

• updated mappy for extra option max_sw_mat

  lh3

  committed
  8a2b1cd

Commits on Oct 11, 2018

• Release minimap2-2.13 (r850)

  lh3

  committed
  5d5d392

Commits on Sep 12, 2018

• PEP8 and other minor styles changes

  

  chris-rands

  authored and

  lh3

  committed
  791e89c

Commits on Aug 6, 2018

• allow mappy to change scoring

  lh3

  committed
  9a567e4

• explain added parameters

  lh3

  committed
  a1b7219

• r823: mappy to index a single sequence

  lh3

  committed
  b0f39a1

Commits on Jul 25, 2018

• r819: mappy to support cs/MD

  lh3

  committed
  ff9917a

Commits on Jul 5, 2018

• Release the GIL to allow native Python threading.

  

  hyeshik

  authored and

  lh3

  committed
  c92a686

Commits on Jun 21, 2018

• Release minimap2-2.11 (r797)

  lh3

  committed
  0517972

Commits on Jun 19, 2018

• added __version__; resolved lh3#165

  Show description for e9ca0c9
  lh3

  committed
  e9ca0c9

• Allow setting max_frag_len on a per alignment level

  

  mvdbeek

  authored and

  lh3

  committed
  1bde2cf

• Allow setting max_frag_len parameter in Aligner class

  

  mvdbeek

  authored and

  lh3

  committed
  31fc0f2

Commits on Apr 30, 2018

• r770: matching N bases not working properly (lh3#155)

  lh3

  committed
  734ac37

Commits on Mar 29, 2018

• r763: fine control long join flank len (lh3#128)

  lh3

  committed
  ee4cd08

Commits on Mar 26, 2018

• fixed two mappy warnings

  lh3

  committed
  7938ed4

Commits on Mar 12, 2018

• r741: added --min-occ-floor to improve lh3#107

  lh3

  committed
  bdc615c

Commits on Mar 9, 2018

• fixed a bug/typo in Aligner.seq() (lh3#126)

  lh3

  committed
  96b132c

Commits on Feb 23, 2018

• r718: retrieve sequence from the index

  lh3

  committed
  24a4808

Commits on Feb 20, 2018

• bugfix: in-place revcomp() not working

  lh3

  committed
  29ed675

• added reverse complement

  lh3

  committed
  7dc7097

Commits on Feb 17, 2018

• fixed a typo in mappy (lh3#117)

  lh3

  committed
  090361c

Commits on Feb 15, 2018

• r708: implemented double Z-drop thresholds (lh3#112)

  Show description for 1372977
  lh3

  committed
  1372977

Commits on Feb 12, 2018

• r703: added --max-clip-ratio

  Show description for 7ef5490
  lh3

  committed
  7ef5490

Commits on Feb 5, 2018

• r685: tune end seed filter again

  lh3

  committed
  29b4a17

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