[GraphBolt][CUDA] Refactor Gather operation. (dmlc#7269)

graphbolt/include/graphbolt/cuda_ops.h

@@ -149,6 +149,20 @@ std::tuple<torch::Tensor, torch::Tensor, torch::Tensor> SliceCSCIndptrHetero(
  */
 torch::Tensor ExclusiveCumSum(torch::Tensor input);
 
+/**
+ * @brief Computes the gather operation on a given input and index tensor.
+ *
+ * @param input The input tensor.
+ * @param index The index tensor.
+ * @param dtype The optional output dtype. If not given, inferred from the input
+ * tensor.
+ *
+ * @return The result of the input.gather(0, index).to(dtype) operation.
+ */
+torch::Tensor Gather(
+    torch::Tensor input, torch::Tensor index,
+    torch::optional<torch::ScalarType> dtype = torch::nullopt);
+
 /**
  * @brief Select rows from input tensor according to index tensor.
  *

graphbolt/src/cuda/gather.cu

@@ -0,0 +1,36 @@
+/**
+ *  Copyright (c) 2023, GT-TDAlab (Muhammed Fatih Balin & Umit V. Catalyurek)
+ * @file cuda/gather.cu
+ * @brief Gather operators implementation on CUDA.
+ */
+#include <thrust/gather.h>
+
+#include "./common.h"
+
+namespace graphbolt {
+namespace ops {
+
+torch::Tensor Gather(
+    torch::Tensor input, torch::Tensor index,
+    torch::optional<torch::ScalarType> dtype) {
+  if (!dtype.has_value()) dtype = input.scalar_type();
+  auto output = torch::empty(index.sizes(), index.options().dtype(*dtype));
+  AT_DISPATCH_INDEX_TYPES(
+      index.scalar_type(), "GatherIndexType", ([&] {
+        AT_DISPATCH_INTEGRAL_TYPES(
+            input.scalar_type(), "GatherInputType", ([&] {
+              using input_t = scalar_t;
+              AT_DISPATCH_INTEGRAL_TYPES(*dtype, "GatherOutputType", ([&] {
+                using output_t = scalar_t;
+                THRUST_CALL(
+                    gather, index.data_ptr<index_t>(),
+                    index.data_ptr<index_t>() + index.size(0),
+                    input.data_ptr<input_t>(), output.data_ptr<output_t>());
+              }));
+            }));
+      }));
+  return output;
+}
+
+}  // namespace ops
+}  // namespace graphbolt

graphbolt/src/cuda/neighbor_sampler.cu

@@ -500,44 +500,9 @@ c10::intrusive_ptr<sampling::FusedSampledSubgraph> SampleNeighbors(
           }
         }
 
-        output_indices = torch::empty(
-            picked_eids.size(0),
-            picked_eids.options().dtype(indices.scalar_type()));
-
-        // Compute: output_indices = indices.gather(0, picked_eids);
-        AT_DISPATCH_INDEX_TYPES(
-            indices.scalar_type(), "SampleNeighborsOutputIndices", ([&] {
-              using indices_t = index_t;
-              THRUST_CALL(
-                  gather, picked_eids.data_ptr<indptr_t>(),
-                  picked_eids.data_ptr<indptr_t>() + picked_eids.size(0),
-                  indices.data_ptr<indices_t>(),
-                  output_indices.data_ptr<indices_t>());
-            }));
+        output_indices = Gather(indices, picked_eids);
       }));
 
-  auto index_type_per_edge_for_sampled_edges = [&] {
-    // The code behaves same as:
-    // output_type_per_edge = type_per_edge.gather(0, picked_eids);
-    // The reimplementation is required due to the torch equivalent does
-    // not work when type_per_edge is on pinned memory
-    auto types = type_per_edge.value();
-    auto output = torch::empty(
-        picked_eids.size(0), picked_eids.options().dtype(types.scalar_type()));
-    AT_DISPATCH_INDEX_TYPES(
-        indptr.scalar_type(), "SampleNeighborsIndptr", ([&] {
-          using indptr_t = index_t;
-          AT_DISPATCH_INTEGRAL_TYPES(
-              types.scalar_type(), "SampleNeighborsOutputTypePerEdge", ([&] {
-                THRUST_CALL(
-                    gather, picked_eids.data_ptr<indptr_t>(),
-                    picked_eids.data_ptr<indptr_t>() + picked_eids.size(0),
-                    types.data_ptr<scalar_t>(), output.data_ptr<scalar_t>());
-              }));
-        }));
-    return output;
-  };
-
   torch::optional<torch::Tensor> output_type_per_edge;
   torch::optional<torch::Tensor> edge_offsets;
   if (type_per_edge && seed_offsets) {
@@ -547,7 +512,7 @@ c10::intrusive_ptr<sampling::FusedSampledSubgraph> SampleNeighbors(
     // type_per_edge of sampled edges and determine the offsets of different
     // sampled etypes and convert to fused hetero indptr representation.
     if (fanouts.size() == 1) {
-      output_type_per_edge = index_type_per_edge_for_sampled_edges();
+      output_type_per_edge = Gather(*type_per_edge, picked_eids);
       torch::Tensor output_in_degree, sliced_output_indptr;
       sliced_output_indptr =
           output_indptr.slice(0, 0, output_indptr.size(0) - 1);
@@ -652,7 +617,7 @@ c10::intrusive_ptr<sampling::FusedSampledSubgraph> SampleNeighbors(
     output_indptr =
         output_indptr.slice(0, 0, output_indptr.size(0), fanouts.size());
     if (type_per_edge)
-      output_type_per_edge = index_type_per_edge_for_sampled_edges();
+      output_type_per_edge = Gather(*type_per_edge, picked_eids);
   }
 
   torch::optional<torch::Tensor> subgraph_reverse_edge_ids = torch::nullopt;