This repository includes some sample analyses of different registration approaches for http://flycircuit.tw data.
It is based on the natverse neuroanatomical data processing suite. See that website for install details, but in R
if(!requireNamespace('remotes', quietly=TRUE))
install.packages('remotes')
remotes::install_github("natverse/natverse", dependencies=TRUE)
should do the trick. See http://natverse.org/install/ for further details.