Removed links to bitbucket

jenfransson · Feb 16, 2024 · 90b638e · 90b638e
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diff --git a/docs/home_contents.html b/docs/home_contents.html
@@ -278,8 +278,6 @@ <h2 class="anchored" data-anchor-id="useful-resources">Useful resources</h2>
 <li>SingleCellExperiment objects for many datasets <a href="https://hemberg-lab.github.io/scRNA.seq.datasets/"><i class="fa-solid fa-square-arrow-up-right" aria-label="square-arrow-up-right"></i></a></li>
 <li>Conquer datasets - many different datasets based on a salmon pipeline <a href="http://imlspenticton.uzh.ch:3838/conquer/"><i class="fa-solid fa-square-arrow-up-right" aria-label="square-arrow-up-right"></i></a></li>
 <li>The Human Cell Atlas project <a href="https://www.humancellatlas.org/"><i class="fa-solid fa-square-arrow-up-right" aria-label="square-arrow-up-right"></i></a></li>
-<li>Bitbucket repository for QC report scripts <a href="https://bitbucket.org/asbj/qc-summary_scrnaseq"><i class="fa-brands fa-bitbucket" aria-label="bitbucket"></i></a></li>
-<li>Bitbucket repository for the NBIS scRNAseq pipeline <a href="https://bitbucket.org/scilifelab-lts/lts-workflows-sm-scrnaseq"><i class="fa-brands fa-bitbucket" aria-label="bitbucket"></i></a></li>
 </ul>
 <hr>
 

diff --git a/docs/search.json b/docs/search.json
@@ -1432,14 +1432,14 @@
     "href": "home_contents.html",
     "title": "Contents",
     "section": "",
-    "text": "You can run the labs either in a Singularity container on Uppmax (recommended during course) or using Docker locally on your system. Instructions on running the labs are provided here"
+    "text": "You can run the labs either in a Singularity container on Uppmax (recommended during course) or using Docker locally on your system. Instructions on running the labs are provided here\nA short description of the data used in the tutorials is provided here."
   },
   {
     "objectID": "home_contents.html#useful-resources",
     "href": "home_contents.html#useful-resources",
     "title": "Contents",
     "section": "Useful resources",
-    "text": "Useful resources\n\nThe github repository for this course \nSingle Cell Glossary\nSingle cell RNA-seq course at from Hemberg lab \nSingle cell RNA-seq course in Python \nSingle cell RNA-seq course at Broad \nRepository listing many scRNA-seq tools \nSingleCellExperiment objects for many datasets \nConquer datasets - many different datasets based on a salmon pipeline \nThe Human Cell Atlas project \nBitbucket repository for QC report scripts \nBitbucket repository for the NBIS scRNAseq pipeline"
+    "text": "Useful resources\n\nThe github repository for this course \nPre-recorded videos of lectures (from 2022) are available on Youtube \nSingle Cell Glossary \nSingle cell RNA-seq course at from Hemberg lab \nSingle cell RNA-seq course in Python \nSingle cell RNA-seq course at Broad \nRepository listing many scRNA-seq tools \nSingleCellExperiment objects for many datasets \nConquer datasets - many different datasets based on a salmon pipeline \nThe Human Cell Atlas project"
   },
   {
     "objectID": "home_info.html",

diff --git a/docs/sitemap.xml b/docs/sitemap.xml
@@ -98,7 +98,7 @@
   </url>
   <url>
     <loc>https://nbisweden.github.io/workshop-scrnaseq/home_contents.html</loc>
-    <lastmod>2024-02-06T01:15:21.182Z</lastmod>
+    <lastmod>2024-02-16T07:58:40.420Z</lastmod>
   </url>
   <url>
     <loc>https://nbisweden.github.io/workshop-scrnaseq/home_info.html</loc>

diff --git a/home_contents.qmd b/home_contents.qmd
@@ -48,7 +48,5 @@ This topics below are not covered in the workshop and are therefore optional. Th
 - SingleCellExperiment objects for many datasets [{{< fa square-arrow-up-right >}}](https://hemberg-lab.github.io/scRNA.seq.datasets/)
 - Conquer datasets - many different datasets based on a salmon pipeline [{{< fa square-arrow-up-right >}}](http://imlspenticton.uzh.ch:3838/conquer/)
 - The Human Cell Atlas project [{{< fa square-arrow-up-right >}}](https://www.humancellatlas.org/)
-- Bitbucket repository for QC report scripts [{{< fa brands bitbucket >}}](https://bitbucket.org/asbj/qc-summary_scrnaseq)
-- Bitbucket repository for the NBIS scRNAseq pipeline [{{< fa brands bitbucket >}}](https://bitbucket.org/scilifelab-lts/lts-workflows-sm-scrnaseq)
 
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