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waysciencelab.com Public
Forked from WayScience/waysciencelab.comHomepage for all happenings in the Way Lab at CU Anschutz
SCSS BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2024 -
pediatric_cancer_atlas_profiling Public
Forked from WayScience/pediatric_cancer_atlas_profilingJupyter Notebook Creative Commons Zero v1.0 Universal UpdatedDec 11, 2024 -
GFF_3D_organoid_profiling_pipeline Public
Forked from WayScience/GFF_3D_organoid_profiling_pipelineJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedDec 4, 2024 -
CPBS7601 Public
Forked from WayScience/CPBS7601Course on computing skills in biomedical informatics
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedNov 15, 2024 -
GFF_2D_organoid_prototyping Public
Forked from WayScience/GFF_2D_organoid_prototypingJupyter Notebook Creative Commons Zero v1.0 Universal UpdatedNov 11, 2024 -
targeted_fibrosis_drug_screen Public
Forked from WayScience/targeted_fibrosis_drug_screenJupyter Notebook Creative Commons Zero v1.0 Universal UpdatedOct 16, 2024 -
nuclear_speckles_analysis Public
Forked from WayScience/nuclear_speckles_analysisJupyter Notebook Creative Commons Zero v1.0 Universal UpdatedSep 27, 2024 -
CP_Parallel Public
Forked from WayScience/CP_ParallelTraditionally, headless mode for CellProfiler can only run with one worker at a time with one set of images, which can take a long time sequentially. CP Parallel will run multiple instances of Cell…
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 23, 2024 -
nf1_schwann_cell_morphology_signature Public
Forked from WayScience/nf1_schwann_cell_morphology_signatureJupyter Notebook Creative Commons Zero v1.0 Universal UpdatedSep 5, 2024 -
nf1_schwann_cell_painting_data Public
Forked from WayScience/nf1_schwann_cell_painting_dataThis repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedAug 20, 2024 -
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coSMicQC Public
Forked from WayScience/coSMicQCSingle cell Morphology Quality Control (coSMicQC)
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 13, 2024 -
nuclear_speckle_image_profiling Public
Forked from WayScience/nuclear_speckle_image_profilingImage analyis and image-based profiling of nuclear speckle dataset extracting intensity based features.
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedAug 5, 2024 -
JUMP-single-cell Public
Forked from WayScience/JUMP-single-cellSingle cell analysis of the JUMP Cell Painting consortium data
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJun 10, 2024 -
live_cell_timelapse_apoptosis Public
Forked from WayScience/live_cell_timelapse_apoptosisJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 3, 2024 -
ultrastructural_mitochonria_morphology_analysis Public
Forked from WayScience/ultrastructural_mitochondria_morphology_analysisJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 16, 2024 -
phenotypic_profiling_model Public
Forked from WayScience/phenotypic_profilingTraining and validating ML model using data from https://github.com/WayScience/mitocheck_data
Jupyter Notebook Creative Commons Attribution 4.0 International UpdatedFeb 14, 2024 -
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IC_Test Public
Forked from WayScience/IC_TestThis repository holds all of the research and code used to develop IC Test.
Python Creative Commons Zero v1.0 Universal UpdatedJul 19, 2023 -
pyroptosis_signature Public
Forked from WayScience/pyroptosis_signature_image_profilingThis repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedJul 12, 2023 -
pycytominer Public
Forked from cytomining/pycytominerPython package for processing image-based profiling data
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 10, 2023 -
sandbox Public
Forked from PennGCB/sandboxA place to mess around learning github
MIT License UpdatedJul 7, 2023 -
cell-health-data Public
Forked from WayScience/cell-health-dataData processing for the Cell Painting data from the Cell Health experiments
Jupyter Notebook UpdatedMay 2, 2023 -
IDR_stream Public
Forked from WayScience/IDR_streamSoftware for feature extraction from IDR image data
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 5, 2023 -
Benchmarking_NF1_data Public
Forked from WayScience/Benchmarking_NF1_data -
CellProfiler-plugins Public
Forked from CellProfiler/CellProfiler-pluginsCommunity-contributed and experimental CellProfiler modules.
Python UpdatedJan 31, 2023 -
CellProfiler_Prototyping Public
Forked from WayScience/CellProfiler_PrototypingThis repository contains CellProfiler pipelines testing various steps within a cell image analysis pipeline.
Creative Commons Zero v1.0 Universal UpdatedOct 17, 2022 -
NF1_Project_Figure Public
The pipeline used to create the figure for the NF1 grant uses code from https://github.com/jr0th/segmentation/blob/master/visualization/CellArt.ipynb
Creative Commons Zero v1.0 Universal UpdatedJul 13, 2022