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jfct777/README.md
YOUR-ALT-TEXT

Welcome to My GitHub Profile

👨‍💻 About Me

I am a passionate bioinformatics engineer dedicated to designing automated workflows and genomic data analytics. My expertise spans from software engineering to bioinformatics analysis, with a strong focus on leveraging virtualization and automation technologies to tackle complex issues in genomics and health.

🚀 My Projects

Throughout my career, I've had the privilege to contribute to a broad array of projects, including:

  • Automated Workflow Design: Developing automated bioinformatics workflows using virtualization technologies like Docker and Singularity, and automation platforms like Nextflow.
  • Bioinformatics Analysis: Processing NGS data from clinical samples to identify genetic variants associated with rare and hereditary diseases, using advanced tools like GATK4.
  • Comparative Genomics and Phylogenomics: Research in the comparative genomics of protozoa, bacteria, and viruses, establishing a solid foundation in bioinformatics.

🛠 Technologies and Tools

  • Virtualization: Docker, Singularity
  • Programming languages: Perl, Python, Bash, R.
  • Workflow Automation: Nextflow, BASH
  • Cloud Computing: AWS
  • Genomic Analysis: FastQC, Trimmomatic,SAMtools,Picard Tools, GATK4, ANNOVAR, VEP, SnpEff, among others.

🌱 What I'm Currently Working On

I am presently engaged in crafting technical recommendations for the architecture of a national genomic and health data platform and repository. This project aims to establish a robust infrastructure to support precision medicine in Brazil.

📫 How to Reach Me

If you're interested in collaborating or would like to learn more about my work, feel free to reach out through:


Thank you for visiting my profile. I hope you find my projects and interests as exciting as I do!

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