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scbean Public
Single-cell data analysis
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GCNPCC Public
gene co-expression networks using partial correlation coefficients
R UpdatedFeb 28, 2024 -
seqan3 Public
Forked from seqan/seqan3The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
C++ Other UpdatedFeb 5, 2024 -
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 25, 2024 -
ScaleHD Public
Forked from helloabunai/ScaleHDAutomated DNA micro-satellite genotyping
Python MIT License UpdatedDec 6, 2023 -
ExpansionHunter Public
Forked from Illumina/ExpansionHunterA tool for estimating repeat sizes
C++ Other UpdatedSep 17, 2023 -
vipcca Public
Single-cell alignment
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jhulab Public
Forked from uwsampa/research-group-weba template for research group sites
HTML Other UpdatedJan 9, 2023 -
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seurat-wrappers Public
Forked from satijalab/seurat-wrappersCommunity-provided extensions to Seurat
R GNU General Public License v3.0 UpdatedNov 9, 2020 -
Batch-effect-removal-benchmarking Public
Forked from JinmiaoChenLab/Batch-effect-removal-benchmarkingA benchmark of batch-effect correction methods for single-cell RNA sequencing data
Jupyter Notebook UpdatedMay 11, 2020 -
SPARK Public
Forked from xzhoulab/SPARKSpatially resolved transcriptomic analysis
R GNU General Public License v3.0 UpdatedMar 2, 2020 -
SPARK-Analysis Public
Forked from xzhoulab/SPARK-Analysisspatially resolved data analysis
R UpdatedSep 11, 2019 -
scanalyse Public
C++ library for single cell analyses
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st_pipeline Public
Forked from SpatialTranscriptomicsResearch/st_pipelineST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Python Other UpdatedMay 24, 2019 -
scvae Public
Forked from scvae/scvaeDeep learning for single-cell transcript counts
Python Apache License 2.0 UpdatedMay 18, 2019 -
scanpy Public
Forked from scverse/scanpySingle-Cell Analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 28, 2019 -
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desc Public
Forked from eleozzr/descDeep Embedding for Single-cell Clustering
Python UpdatedFeb 15, 2019 -
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dca Public
Forked from theislab/dcaDeep count autoencoder for denoising scRNA-seq data
Python Apache License 2.0 UpdatedNov 12, 2018 -
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scRNA.seq.datasets Public
Forked from hemberg-lab/scRNA.seq.datasetsCollection of public scRNA-Seq datasets used by our group
R GNU General Public License v3.0 UpdatedMay 8, 2018