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Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
A toolkit of spatial transcriptomic analysis.
Spatial transcriptomics of heart tissue
This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatia…
Gene group activity utility functions for Scanpy
Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
This project is work in progress! https://www.sc-best-practices.org