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Starred repositories

12 stars written in Jupyter Notebook
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标注自己的数据集,训练、评估、测试、部署自己的人工智能算法

Jupyter Notebook 3,412 687 Updated Jul 24, 2024

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

Jupyter Notebook 1,205 506 Updated Jan 28, 2025

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

Jupyter Notebook 233 56 Updated Feb 9, 2025

A toolkit of spatial transcriptomic analysis.

Jupyter Notebook 216 66 Updated Feb 12, 2025

Spatial transcriptomics of heart tissue

Jupyter Notebook 80 37 Updated Oct 7, 2023

This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatia…

Jupyter Notebook 73 20 Updated Oct 9, 2024

Gene group activity utility functions for Scanpy

Jupyter Notebook 67 4 Updated Dec 21, 2024

Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data

Jupyter Notebook 50 13 Updated Jul 22, 2024
Jupyter Notebook 27 5 Updated Jul 14, 2023

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

Jupyter Notebook 22 Updated Sep 6, 2024

Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics

Jupyter Notebook 2 Updated Aug 4, 2023

This project is work in progress! https://www.sc-best-practices.org

Jupyter Notebook 1 Updated Feb 17, 2023