Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

Approaching (Almost) Any Machine Learning Problem

## AI医院: Multi-Agent 医学智能体 与患者进行多轮对话，提出相关和探索性的问题，推荐适当的医学检查，并在收集足够的信息后做出诊断。设置检查员，他们专门负责与患者互动并提供相关的医学检查结果，确保医生能够获得患者必要的客观信息以做出准确诊断。此外，主治医生负责在整个会话后评估医生的表现。 模拟患者与多名医生之间的互动，包括体检结果的收集和最终诊断。

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

R code used to perform the analyses described in the paper "Prelude to Malignancy: A Gene Expression Signature in Normal Mammary Gland from Breast Cancer Patients Suggests Pre-tumorous Alterations …

Simplify ggplot2 visualisation

A Toolbox for Spatial Transcriptomics Analysis

Multimodality Fusion Subtyping

Temporal Cell-Cell Interaction Analysis in Single-Cell RNA-seq Data

Python资源大全中文版，包括：Web框架、网络爬虫、模板引擎、数据库、数据可视化、图片处理等，由「开源前哨」和「Python开发者」微信公号团队维护更新。

Word power made easy 词汇笔记和在线思维导图

R package for detecting doublets in single-cell RNA sequencing data

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

scRNAseq Data Analysis Code

Collection of biocm-tools for scRNAseq analysis

An API wrapper for ToppGene

Methods to discover gene programs on single-cell data

Conversion between scRNA-seq objects

Generate static html documentation for an R package

Visualising data frames as funky heatmaps 📊

Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕

MzDOCK - An Automated GUI based pipeline for Molecular Docking

Interpretation of cell states using reference single-cell maps

R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.

Viscello for Visualization of Single Cell Data

A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.

A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.