Ecological networks of dissolved organic matter and microorganisms under global change.
The package includes functions for analyzing the thermal responses, assembly processes, transformation and microbial associations of DOM.
Package maintainer: Jianjun Wang([email protected])
Developers: Ang Hu, Fanfan Meng
You can install the development version of iDOM from GitHub with:
# install.packages("devtools")
devtools::install_github("jianjunwang/iDOM")Installing packages in R from zip source.You may have downloaded iDOM in zip or tar.gz format. In order to install the package from a local zip file you just need to call the install.packages function with arguments repos = NULL and type = “source”.
install.packages("file_path/package_file_name.extension",repos = NULL, type = "source")DOM.H2: Calculates the network-level specialization of all interacting trophic levels in DOM-microbe bipartite networks, including full, negative and positive networks.
iCTR: The function of iCTR is relevant to Hu et al. (under review). The manuscript will be available as preprint soon. The code will be updated upon acceptance.
Wang J, Pan F, Soininen J, Heino J, Shen J. 2016. Nutrient enrichment modifies temperature-biodiversity relationships in large-scale field experiments. Nature Communications 7:1-9. https://doi.org/10.1038/ncomms13960
Hu A, Choi M, Tanentzap AJ, Liu J, Jang K-S, Lennon JT, Liu Y, Soininen J, Lu X, Zhang Y, Shen J, Wang J. 2021. Quantifying microbial associations of dissolved organic matter under global change. bioRxiv. https://doi.org/10.1101/2021.08.12.456177
Hu A, Choi M, Tanentzap AJ, Liu J, Jang K-S, Lennon JT, Liu Y, Soininen J, Lu X, Zhang Y, Shen J, Wang J. 2022. Ecological networks of dissolved organic matter and microorganisms under global change. Nature communications. https://www.nature.com/articles/s41467-022-31251-1
Hu A, Jang K-S, Meng F, Stegen J, Tanentzap AJ, Choi M, Lennon JT, Soininen J, and Wang J. 2022. Microbial and Environmental Processes Shape the Link between Organic Matter Functional Traits and Composition. Environmental Science & Technology. https://pubs.acs.org/doi/abs/10.1021/acs.est.2c01432