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Updated constraints.sql mimic_core to mimic_hosp
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@alexmbennett2 @alistairewj
alexmbennett2 authored and alistairewj committed Jul 7, 2022
1 parent 56e006c commit 874c4a7
Showing 1 changed file with 48 additions and 51 deletions.
99 changes: 48 additions & 51 deletions mimic-iv/buildmimic/postgres/constraint.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -187,64 +187,52 @@ ADD CONSTRAINT procedureevents_pk
---------------------------

----------
-- core --
-- hosp --
----------

-- admissions

ALTER TABLE mimic_core.admissions DROP CONSTRAINT IF EXISTS admissions_patients_fk;
ALTER TABLE mimic_core.admissions
ALTER TABLE mimic_hosp.admissions DROP CONSTRAINT IF EXISTS admissions_patients_fk;
ALTER TABLE mimic_hosp.admissions
ADD CONSTRAINT admissions_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);

-- transfers

ALTER TABLE mimic_core.transfers DROP CONSTRAINT IF EXISTS transfers_patients_fk;
ALTER TABLE mimic_core.transfers
ADD CONSTRAINT transfers_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);

----------
-- hosp --
----------
REFERENCES mimic_hosp.patients (subject_id);

-- diagnoses_icd

ALTER TABLE mimic_hosp.diagnoses_icd DROP CONSTRAINT IF EXISTS diagnoses_icd_patients_fk;
ALTER TABLE mimic_hosp.diagnoses_icd
ADD CONSTRAINT diagnoses_icd_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.diagnoses_icd DROP CONSTRAINT IF EXISTS diagnoses_icd_admissions_fk;
ALTER TABLE mimic_hosp.diagnoses_icd
ADD CONSTRAINT diagnoses_icd_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- drgcodes

ALTER TABLE mimic_hosp.drgcodes DROP CONSTRAINT IF EXISTS drgcodes_patients_fk;
ALTER TABLE mimic_hosp.drgcodes
ADD CONSTRAINT drgcodes_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.drgcodes DROP CONSTRAINT IF EXISTS drgcodes_admissions_fk;
ALTER TABLE mimic_hosp.drgcodes
ADD CONSTRAINT drgcodes_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- emar_detail

ALTER TABLE mimic_hosp.emar_detail DROP CONSTRAINT IF EXISTS emar_detail_patients_fk;
ALTER TABLE mimic_hosp.emar_detail
ADD CONSTRAINT emar_detail_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.emar_detail DROP CONSTRAINT IF EXISTS emar_detail_emar_fk;
ALTER TABLE mimic_hosp.emar_detail
Expand All @@ -258,27 +246,27 @@ ALTER TABLE mimic_hosp.emar DROP CONSTRAINT IF EXISTS emar_patients_fk;
ALTER TABLE mimic_hosp.emar
ADD CONSTRAINT emar_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.emar DROP CONSTRAINT IF EXISTS emar_admissions_fk;
ALTER TABLE mimic_hosp.emar
ADD CONSTRAINT emar_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- hcpcsevents

ALTER TABLE mimic_hosp.hcpcsevents DROP CONSTRAINT IF EXISTS hcpcsevents_patients_fk;
ALTER TABLE mimic_hosp.hcpcsevents
ADD CONSTRAINT hcpcsevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.hcpcsevents DROP CONSTRAINT IF EXISTS hcpcsevents_admissions_fk;
ALTER TABLE mimic_hosp.hcpcsevents
ADD CONSTRAINT hcpcsevents_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

ALTER TABLE mimic_hosp.hcpcsevents DROP CONSTRAINT IF EXISTS hcpcsevents_d_hcpcs_fk;
ALTER TABLE mimic_hosp.hcpcsevents
Expand All @@ -292,7 +280,7 @@ ALTER TABLE mimic_hosp.labevents DROP CONSTRAINT IF EXISTS labevents_patients_fk
ALTER TABLE mimic_hosp.labevents
ADD CONSTRAINT labevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.labevents DROP CONSTRAINT IF EXISTS labevents_d_labitems_fk;
ALTER TABLE mimic_hosp.labevents
Expand All @@ -306,35 +294,35 @@ ALTER TABLE mimic_hosp.microbiologyevents DROP CONSTRAINT IF EXISTS microbiology
ALTER TABLE mimic_hosp.microbiologyevents
ADD CONSTRAINT microbiologyevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.microbiologyevents DROP CONSTRAINT IF EXISTS microbiologyevents_admissions_fk;
ALTER TABLE mimic_hosp.microbiologyevents
ADD CONSTRAINT microbiologyevents_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- pharmacy

ALTER TABLE mimic_hosp.pharmacy DROP CONSTRAINT IF EXISTS pharmacy_patients_fk;
ALTER TABLE mimic_hosp.pharmacy
ADD CONSTRAINT pharmacy_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.pharmacy DROP CONSTRAINT IF EXISTS pharmacy_admissions_fk;
ALTER TABLE mimic_hosp.pharmacy
ADD CONSTRAINT pharmacy_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- poe_detail

ALTER TABLE mimic_hosp.poe_detail DROP CONSTRAINT IF EXISTS poe_detail_patients_fk;
ALTER TABLE mimic_hosp.poe_detail
ADD CONSTRAINT poe_detail_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.poe_detail DROP CONSTRAINT IF EXISTS poe_detail_poe_fk;
ALTER TABLE mimic_hosp.poe_detail
Expand All @@ -348,55 +336,55 @@ ALTER TABLE mimic_hosp.poe DROP CONSTRAINT IF EXISTS poe_patients_fk;
ALTER TABLE mimic_hosp.poe
ADD CONSTRAINT poe_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.poe DROP CONSTRAINT IF EXISTS poe_admissions_fk;
ALTER TABLE mimic_hosp.poe
ADD CONSTRAINT poe_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- prescriptions

ALTER TABLE mimic_hosp.prescriptions DROP CONSTRAINT IF EXISTS prescriptions_patients_fk;
ALTER TABLE mimic_hosp.prescriptions
ADD CONSTRAINT prescriptions_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.prescriptions DROP CONSTRAINT IF EXISTS prescriptions_admissions_fk;
ALTER TABLE mimic_hosp.prescriptions
ADD CONSTRAINT prescriptions_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- procedures_icd

ALTER TABLE mimic_hosp.procedures_icd DROP CONSTRAINT IF EXISTS procedures_icd_patients_fk;
ALTER TABLE mimic_hosp.procedures_icd
ADD CONSTRAINT procedures_icd_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.procedures_icd DROP CONSTRAINT IF EXISTS procedures_icd_admissions_fk;
ALTER TABLE mimic_hosp.procedures_icd
ADD CONSTRAINT procedures_icd_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- services

ALTER TABLE mimic_hosp.services DROP CONSTRAINT IF EXISTS services_patients_fk;
ALTER TABLE mimic_hosp.services
ADD CONSTRAINT services_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_hosp.services DROP CONSTRAINT IF EXISTS services_admissions_fk;
ALTER TABLE mimic_hosp.services
ADD CONSTRAINT services_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- transfers

Expand All @@ -405,6 +393,15 @@ ALTER TABLE mimic_hosp.transfers
ADD CONSTRAINT transfers_pk
PRIMARY KEY (transfer_id);

-- transfers

ALTER TABLE mimic_hosp.transfers DROP CONSTRAINT IF EXISTS transfers_patients_fk;
ALTER TABLE mimic_hosp.transfers
ADD CONSTRAINT transfers_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_hosp.patients (subject_id);


---------
-- icu --
---------
Expand All @@ -415,13 +412,13 @@ ALTER TABLE mimic_icu.chartevents DROP CONSTRAINT IF EXISTS chartevents_patients
ALTER TABLE mimic_icu.chartevents
ADD CONSTRAINT chartevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_icu.chartevents DROP CONSTRAINT IF EXISTS chartevents_admissions_fk;
ALTER TABLE mimic_icu.chartevents
ADD CONSTRAINT chartevents_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

ALTER TABLE mimic_icu.chartevents DROP CONSTRAINT IF EXISTS chartevents_icustays_fk;
ALTER TABLE mimic_icu.chartevents
Expand All @@ -441,13 +438,13 @@ ALTER TABLE mimic_icu.datetimeevents DROP CONSTRAINT IF EXISTS datetimeevents_pa
ALTER TABLE mimic_icu.datetimeevents
ADD CONSTRAINT datetimeevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_icu.datetimeevents DROP CONSTRAINT IF EXISTS datetimeevents_admissions_fk;
ALTER TABLE mimic_icu.datetimeevents
ADD CONSTRAINT datetimeevents_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

ALTER TABLE mimic_icu.datetimeevents DROP CONSTRAINT IF EXISTS datetimeevents_icustays_fk;
ALTER TABLE mimic_icu.datetimeevents
Expand All @@ -467,27 +464,27 @@ ALTER TABLE mimic_icu.icustays DROP CONSTRAINT IF EXISTS icustays_patients_fk;
ALTER TABLE mimic_icu.icustays
ADD CONSTRAINT icustays_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_icu.icustays DROP CONSTRAINT IF EXISTS icustays_admissions_fk;
ALTER TABLE mimic_icu.icustays
ADD CONSTRAINT icustays_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

-- inputevents

ALTER TABLE mimic_icu.inputevents DROP CONSTRAINT IF EXISTS inputevents_patients_fk;
ALTER TABLE mimic_icu.inputevents
ADD CONSTRAINT inputevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_icu.inputevents DROP CONSTRAINT IF EXISTS inputevents_admissions_fk;
ALTER TABLE mimic_icu.inputevents
ADD CONSTRAINT inputevents_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

ALTER TABLE mimic_icu.inputevents DROP CONSTRAINT IF EXISTS inputevents_icustays_fk;
ALTER TABLE mimic_icu.inputevents
Expand All @@ -507,13 +504,13 @@ ALTER TABLE mimic_icu.outputevents DROP CONSTRAINT IF EXISTS outputevents_patien
ALTER TABLE mimic_icu.outputevents
ADD CONSTRAINT outputevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_icu.outputevents DROP CONSTRAINT IF EXISTS outputevents_admissions_fk;
ALTER TABLE mimic_icu.outputevents
ADD CONSTRAINT outputevents_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

ALTER TABLE mimic_icu.outputevents DROP CONSTRAINT IF EXISTS outputevents_icustays_fk;
ALTER TABLE mimic_icu.outputevents
Expand All @@ -533,13 +530,13 @@ ALTER TABLE mimic_icu.procedureevents DROP CONSTRAINT IF EXISTS procedureevents_
ALTER TABLE mimic_icu.procedureevents
ADD CONSTRAINT procedureevents_patients_fk
FOREIGN KEY (subject_id)
REFERENCES mimic_core.patients (subject_id);
REFERENCES mimic_hosp.patients (subject_id);

ALTER TABLE mimic_icu.procedureevents DROP CONSTRAINT IF EXISTS procedureevents_admissions_fk;
ALTER TABLE mimic_icu.procedureevents
ADD CONSTRAINT procedureevents_admissions_fk
FOREIGN KEY (hadm_id)
REFERENCES mimic_core.admissions (hadm_id);
REFERENCES mimic_hosp.admissions (hadm_id);

ALTER TABLE mimic_icu.procedureevents DROP CONSTRAINT IF EXISTS procedureevents_icustays_fk;
ALTER TABLE mimic_icu.procedureevents
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