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Commits on Mar 26, 2024

• updated the docker to correct the umis per cell metric in STARsolo li… (broadinstitute#1250)

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  ekiernan

  authored
  17b236c

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Commits on Mar 21, 2024

• Update StarAlign.wdl

  ekiernan

  committed
  1fd4d09

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• added combined mtx file as output

  ekiernan

  committed
  defb5bd

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Commits on Mar 20, 2024

• fixed docker for testing

  ekiernan

  committed
  b95b0e4

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• testing new docker

  ekiernan

  committed
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Commits on Mar 15, 2024

• renamed barcodes for when count_exons is ised

  ekiernan

  committed
  c3563bc

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• changed tsv to mtx

  ekiernan

  committed
  e2c6d86

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• updated docker and library metrics input

  ekiernan

  committed
  46cc519

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Commits on Mar 13, 2024

• updated STARalign for combined matrix

  ekiernan

  committed
  bd9c7e3

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• Update StarAlign.wdl

  ekiernan

  committed
  eb4d89c

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Commits on Mar 1, 2024

• new docker for mergestaroutputs

  ekiernan

  committed
  5c81acd

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• Merge branch 'develop' into lk-combine-shard-metrics

  ekiernan

  authored
  7182931

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Commits on Feb 29, 2024

• joinbarcodes disk and mem inputs

  ekiernan

  authored
  99c5ad6

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• official docker update

  ekiernan

  committed
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Commits on Feb 28, 2024

• made counting mode optional because slideseq doesn't use

  ekiernan

  committed
  1f44294

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• adding monitoring

  ekiernan

  committed
  664e47b

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• changed path for created-merged-npz-output

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  ekiernan

  committed
  89fd5ec

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Commits on Feb 26, 2024

• Rc 2356 shardids (broadinstitute#1203)

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  4 peopleauthored
  8948f4f

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Commits on Feb 24, 2024

• updated optimus for mergestar input

  ekiernan

  committed
  f72dda8

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• Update StarAlign.wdl

  ekiernan

  committed
  acca1bc

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Commits on Feb 16, 2024

• Merge branch 'develop' into rc-2356-shardids

  ekiernan

  authored
  ab1517c

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• add check to modify cell_reads only when files exist

  

  Sid Cox

  committed
  64b433c

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• updating gatk to 4.5.0.0 (broadinstitute#1153)

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  3 peopleauthored
  32bcffe

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Commits on Feb 15, 2024

• Merge branch 'develop' into rc-2356-shardids

  ekiernan

  authored
  c4f0f39

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Commits on Feb 14, 2024

• PD-2474: Changed warptools docker for all Metrics tasks (broadinstitute#1177)

  aawdeh

  authored
  69c6827

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• fix align features files

  rsc3

  committed
  b38afe7

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• fix �[200~cell_reads_files~ bug

  rsc3

  committed
  5c8cf2c

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Commits on Feb 13, 2024

• rearrange cell reads file with shard number

  rsc3

  committed
  7aa1fc4

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• rearrange cell reads file with shard number

  rsc3

  committed
  5830e7d

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• add shard counter for align_features

  rsc3

  committed
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Commits on Feb 12, 2024

• add shard counter to summary file output

  rsc3

  committed
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• modify awk WDL to cat directly to output file with >> instead of cat

  rsc3

  committed
  e1c6825

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Commits on Feb 8, 2024

• Add shardid column to umipercell file

  rsc3

  committed
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• Add shardid column to umipercell file

  rsc3

  committed
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Commits on Feb 6, 2024

• BGE settings for Reblocking and JointCalling pipelines (broadinstitute#1076)

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  meganshand

  and

  nikellepetrillo

  authored
  45928e3

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