Open source code for AlphaFold.

Benchmarks for generative chemistry

antiSMASH

GenUI frontend application. It provides a GUI to the GenUI REST API web services.

AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By adding the molecular context to the protein structures, the mod…

Similarity networks of biosynthetic gene clusters

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

Docker files to create an image you can use to build pdb-redo executables that run on older OS's like CentOS

Large scale meta-analysis of soybean

Mirror of Apache Spark

❗ This is a read-only mirror of the CRAN R package repository. glmnet — Lasso and Elastic-Net Regularized Generalized Linear Models. Homepage: https://glmnet.stanford.edu, https://dx.doi.org/10.186…

Differential gene expression analysis based on the negative binomial distribution

Integrative visualization of multiple omic datasets onto KEGG pathways.

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

C++ implementation of SBOL 2.2.0.

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

Web application enabling users and software to browse, upload, and share synthetic biology designs

a customizable protein feature visualization tool

Python Environment for Modeling and Simulating Biological Systems

Simulation software for biochemical systems that use mass action kinetics based on maximum entropy production.

Commands and tools for building conda packages

Caffe2 is a lightweight, modular, and scalable deep learning framework.

Building SuperTranscripts: A linear representation of transcriptome data

Computation using data flow graphs for scalable machine learning

Distributed Deep Learning on Spark