Updated themes, added toc to dashboard

about.Rmd

@@ -4,13 +4,14 @@ output:
   html_document:
     toc: true
     toc_float: true
-    theme: cerulean
+    theme: yeti
 ---
 
 # Me
 
 ![**My Headshot**](images/photome.jpeg)
 
+
 ## Current work
 
 I am currently a post-graduate clinical fellow in Gastroenterology at the Columbia University Irving Medical Center (CUIMC), where I am enrolled in the Master’s of Science in Patient Oriented Research program for clinicians through the Columbia Mailman School of Public Health and a trainee in the lab of Dr. Julian Abrams. I investigate how the human microbiome is altered in pathologic states to better understand the role it may play in the pathophysiology of disease to identify possible targets for new therapeutics. I will be working on translational studies of Barrett’s esophagus (a pre-cancerous lesion) and Esophageal Adenocarcinoma to study alterations in the oral and esophageal microbial community structure, and metabolite expression.  

about.html

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 <script src="site_libs/header-attrs-2.24/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
-<link href="site_libs/bootstrap-3.3.5/css/cerulean.min.css" rel="stylesheet" />
+<link href="site_libs/bootstrap-3.3.5/css/yeti.min.css" rel="stylesheet" />
 <script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
 <script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
 <script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>

dashboard.Rmd

@@ -4,6 +4,7 @@ output:
   flexdashboard::flex_dashboard:
     orientation: columns
     vertical_layout: fill
+    toc: true
 ---
 
 ```{r setup, include=FALSE}

education.Rmd

@@ -4,7 +4,7 @@ output:
   html_document:
     toc: true
     toc_float: true
-    theme: cerulean
+    theme: yeti
 ---
 
 # Education
@@ -97,32 +97,35 @@ output:
 
 ## Publications
 
-### ORIGINAL, PEER-REVIEWED RESESRCH PUBLICATIONS IN PRINT OR OTHER MEDIA	
-●	Bloom PP, **Luevano JM Jr**, Miller KJ, Chung RT. Deep stool microbiome analysis in cirrhosis reveals an association between short-chain fatty acids and hepatic encephalopathy. Annals of Hepatology. 2021 Nov-Dec;25:100333. doi: 10.1016/j.aohep.2021.100333. 
+### ORIGINAL, PEER-REVIEWED RESESRCH PUBLICATIONS IN PRINT OR OTHER MEDIA:
 
-●	Gootenberg D, Paer J, **Luevano JM**, Kwon DS. HIV-associated changes in the enteric microbial community: Potential role in loss of homeostasis and development of systemic inflammation. Curr Opin Infect Dis. 2017 Feb;30(1):31-43.
+* Bloom PP, **Luevano JM Jr**, Miller KJ, Chung RT. Deep stool microbiome analysis in cirrhosis reveals an association between short-chain fatty acids and hepatic encephalopathy. Annals of Hepatology. 2021 Nov-Dec;25:100333. doi: 10.1016/j.aohep.2021.100333. 
 
-●	Monaco CL, Gootenberg DB, Zhao G, Handley, S, **Luevano JM**, et al. Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome. Cell Host Microbe. 2016;19(3):311-322. doi:10.1016/j.chom.2016.02.011
+* Gootenberg D, Paer J, **Luevano JM**, Kwon DS. HIV-associated changes in the enteric microbial community: Potential role in loss of homeostasis and development of systemic inflammation. Curr Opin Infect Dis. 2017 Feb;30(1):31-43.
 
-●	Carmody RN, Gerber GK, **Luevano JM**, Gatti DM, Somes L, Svenson KL, Turnbaugh PJ. Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota. Cell Host Microbe. 2015;17(1):72-84. doi:10.1016/j.chom.2014.11.010
+* Monaco CL, Gootenberg DB, Zhao G, Handley, S, **Luevano JM**, et al. Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome. Cell Host Microbe. 2016;19(3):311-322. doi:10.1016/j.chom.2016.02.011
 
-●	Liou AP, Paziuk M, **Luevano Jr. JM**, Machineni S, Turnbaugh PJ, Kaplan LM. Conserved shifts in the gut microbiota due to gastric bypass reduce host weight and adiposity. Sci Transl Med. 2013;5(178):178ra41. doi:10.1126/scitranslmed.3005687
+* Carmody RN, Gerber GK, **Luevano JM**, Gatti DM, Somes L, Svenson KL, Turnbaugh PJ. Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota. Cell Host Microbe. 2015;17(1):72-84. doi:10.1016/j.chom.2014.11.010
 
-●	Leu K, Kervio E, Obermayer B, Turk-Macleaod R, Yuan Caterina, **Luevano JM**, Chen E, Gerland U, Richert C, Chen I. Cascade of reduced speed and accuracy after errors in enzyme-free copying of nucleic acid sequences. J Am Chem Soc. 2013;135(1):354-366. doi:10.1021/ja3095558
+* Liou AP, Paziuk M, **Luevano Jr. JM**, Machineni S, Turnbaugh PJ, Kaplan LM. Conserved shifts in the gut microbiota due to gastric bypass reduce host weight and adiposity. Sci Transl Med. 2013;5(178):178ra41. doi:10.1126/scitranslmed.3005687
 
-###MEETINGS/INVITED ORAL AND POSTER PRESENTATIONS
-●	**Luevano JM**, Husain A, Kerry I, Drew D, Chan A. ACG Virtual Conference 2020, Invited Oral Abstract: “Functional and Transcriptional Consequences of Aspirin Use on the Human Fecal Microbiome”.
+* Leu K, Kervio E, Obermayer B, Turk-Macleaod R, Yuan Caterina, **Luevano JM**, Chen E, Gerland U, Richert C, Chen I. Cascade of reduced speed and accuracy after errors in enzyme-free copying of nucleic acid sequences. J Am Chem Soc. 2013;135(1):354-366. doi:10.1021/ja3095558
 
-●	Bloom P, **Luevano JM**, Chung R. AASLD 2019 Poster: “Fecal Microbiome, Short-Chain Fatty Acids, and Ammonia Differ in Patients with Cirrhosis and overt Hepatic Encephalopathy”.
+### MEETINGS/INVITED ORAL AND POSTER PRESENTATIONS
 
-●	**Luevano JM**, Gootenberg D, Paer J, Rogers Z, Kwon D. ID Week 2017 Poster: “HIV-Associated Changes in the Gut Microbiome in Untreated, Treated, and Immunologically Controlled Disease”.
+* **Luevano JM**, Husain A, Kerry I, Drew D, Chan A. ACG Virtual Conference 2020, Invited Oral Abstract: “Functional and Transcriptional Consequences of Aspirin Use on the Human Fecal Microbiome”.
 
-●	**Luevano JM**, Gootenberg D, Paer J, Kwon D. Conference on Retroviruses and Opportunistic Infections (2016) Poster: “Impact of HIV-Associated Changes in the Gut Microbiome on Disease Progression”.
+* Bloom P, **Luevano JM**, Chung R. AASLD 2019 Poster: “Fecal Microbiome, Short-Chain Fatty Acids, and Ammonia Differ in Patients with Cirrhosis and overt Hepatic Encephalopathy”.
 
-●	**Luevano JM**, Gatti D, Svenson K, Turnbaugh JM. Chicago Annual Conference for Systems Biology (2012) Poster: “Interactions Between Host Genetics, Host Diet, and the Gut Microbiota in Response to Diet Shifts”.
+* **Luevano JM**, Gootenberg D, Paer J, Rogers Z, Kwon D. ID Week 2017 Poster: “HIV-Associated Changes in the Gut Microbiome in Untreated, Treated, and Immunologically Controlled Disease”.
 
-###INVITED AND/OR PEER-SELECTED PRESENTATIONS AT REGIONAL, NATIONAL OR INTERNATIONAL LEVELS:
-* Luevano JM. Panelist for Themed Discussion, “HIV & Microbiome”. Conference on Retroviruses and Opportunistic  Infections (CROI 2016).
+* **Luevano JM**, Gootenberg D, Paer J, Kwon D. Conference on Retroviruses and Opportunistic Infections (2016) Poster: “Impact of HIV-Associated Changes in the Gut Microbiome on Disease Progression”.
+
+* **Luevano JM**, Gatti D, Svenson K, Turnbaugh JM. Chicago Annual Conference for Systems Biology (2012) Poster: “Interactions Between Host Genetics, Host Diet, and the Gut Microbiota in Response to Diet Shifts”.
+
+### INVITED AND/OR PEER-SELECTED PRESENTATIONS AT REGIONAL, NATIONAL OR INTERNATIONAL LEVELS:
+
+* **Luevano JM.** Panelist for Themed Discussion, “HIV & Microbiome”. Conference on Retroviruses and Opportunistic  Infections (CROI 2016).
 
 
 

education.html

@@ -16,7 +16,7 @@
 <script src="site_libs/header-attrs-2.24/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
-<link href="site_libs/bootstrap-3.3.5/css/cerulean.min.css" rel="stylesheet" />
+<link href="site_libs/bootstrap-3.3.5/css/yeti.min.css" rel="stylesheet" />
 <script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
 <script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
 <script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
@@ -492,60 +492,75 @@ <h2>Publications</h2>
 id="original-peer-reviewed-resesrch-publications-in-print-or-other-media"
 class="section level3">
 <h3>ORIGINAL, PEER-REVIEWED RESESRCH PUBLICATIONS IN PRINT OR OTHER
-MEDIA</h3>
-<p>● Bloom PP, <strong>Luevano JM Jr</strong>, Miller KJ, Chung RT. Deep
-stool microbiome analysis in cirrhosis reveals an association between
-short-chain fatty acids and hepatic encephalopathy. Annals of
+MEDIA:</h3>
+<ul>
+<li><p>Bloom PP, <strong>Luevano JM Jr</strong>, Miller KJ, Chung RT.
+Deep stool microbiome analysis in cirrhosis reveals an association
+between short-chain fatty acids and hepatic encephalopathy. Annals of
 Hepatology. 2021 Nov-Dec;25:100333. doi:
-10.1016/j.aohep.2021.100333.</p>
-<p>● Gootenberg D, Paer J, <strong>Luevano JM</strong>, Kwon DS.
+10.1016/j.aohep.2021.100333.</p></li>
+<li><p>Gootenberg D, Paer J, <strong>Luevano JM</strong>, Kwon DS.
 HIV-associated changes in the enteric microbial community: Potential
 role in loss of homeostasis and development of systemic inflammation.
-Curr Opin Infect Dis. 2017 Feb;30(1):31-43.</p>
-<p>● Monaco CL, Gootenberg DB, Zhao G, Handley, S, <strong>Luevano
+Curr Opin Infect Dis. 2017 Feb;30(1):31-43.</p></li>
+<li><p>Monaco CL, Gootenberg DB, Zhao G, Handley, S, <strong>Luevano
 JM</strong>, et al. Altered Virome and Bacterial Microbiome in Human
 Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome.
 Cell Host Microbe. 2016;19(3):311-322. <a
 href="doi:10.1016/j.chom.2016.02.011"
-class="uri">doi:10.1016/j.chom.2016.02.011</a></p>
-<p>● Carmody RN, Gerber GK, <strong>Luevano JM</strong>, Gatti DM, Somes
-L, Svenson KL, Turnbaugh PJ. Diet Dominates Host Genotype in Shaping the
-Murine Gut Microbiota. Cell Host Microbe. 2015;17(1):72-84. <a
-href="doi:10.1016/j.chom.2014.11.010"
-class="uri">doi:10.1016/j.chom.2014.11.010</a></p>
-<p>● Liou AP, Paziuk M, <strong>Luevano Jr. JM</strong>, Machineni S,
+class="uri">doi:10.1016/j.chom.2016.02.011</a></p></li>
+<li><p>Carmody RN, Gerber GK, <strong>Luevano JM</strong>, Gatti DM,
+Somes L, Svenson KL, Turnbaugh PJ. Diet Dominates Host Genotype in
+Shaping the Murine Gut Microbiota. Cell Host Microbe. 2015;17(1):72-84.
+<a href="doi:10.1016/j.chom.2014.11.010"
+class="uri">doi:10.1016/j.chom.2014.11.010</a></p></li>
+<li><p>Liou AP, Paziuk M, <strong>Luevano Jr. JM</strong>, Machineni S,
 Turnbaugh PJ, Kaplan LM. Conserved shifts in the gut microbiota due to
 gastric bypass reduce host weight and adiposity. Sci Transl Med.
 2013;5(178):178ra41. <a href="doi:10.1126/scitranslmed.3005687"
-class="uri">doi:10.1126/scitranslmed.3005687</a></p>
-<p>● Leu K, Kervio E, Obermayer B, Turk-Macleaod R, Yuan Caterina,
+class="uri">doi:10.1126/scitranslmed.3005687</a></p></li>
+<li><p>Leu K, Kervio E, Obermayer B, Turk-Macleaod R, Yuan Caterina,
 <strong>Luevano JM</strong>, Chen E, Gerland U, Richert C, Chen I.
 Cascade of reduced speed and accuracy after errors in enzyme-free
 copying of nucleic acid sequences. J Am Chem Soc. 2013;135(1):354-366.
 <a href="doi:10.1021/ja3095558"
-class="uri">doi:10.1021/ja3095558</a></p>
-<p>###MEETINGS/INVITED ORAL AND POSTER PRESENTATIONS ● <strong>Luevano
-JM</strong>, Husain A, Kerry I, Drew D, Chan A. ACG Virtual Conference
-2020, Invited Oral Abstract: “Functional and Transcriptional
-Consequences of Aspirin Use on the Human Fecal Microbiome”.</p>
-<p>● Bloom P, <strong>Luevano JM</strong>, Chung R. AASLD 2019 Poster:
+class="uri">doi:10.1021/ja3095558</a></p></li>
+</ul>
+</div>
+<div id="meetingsinvited-oral-and-poster-presentations"
+class="section level3">
+<h3>MEETINGS/INVITED ORAL AND POSTER PRESENTATIONS</h3>
+<ul>
+<li><p><strong>Luevano JM</strong>, Husain A, Kerry I, Drew D, Chan A.
+ACG Virtual Conference 2020, Invited Oral Abstract: “Functional and
+Transcriptional Consequences of Aspirin Use on the Human Fecal
+Microbiome”.</p></li>
+<li><p>Bloom P, <strong>Luevano JM</strong>, Chung R. AASLD 2019 Poster:
 “Fecal Microbiome, Short-Chain Fatty Acids, and Ammonia Differ in
-Patients with Cirrhosis and overt Hepatic Encephalopathy”.</p>
-<p>● <strong>Luevano JM</strong>, Gootenberg D, Paer J, Rogers Z, Kwon
+Patients with Cirrhosis and overt Hepatic Encephalopathy”.</p></li>
+<li><p><strong>Luevano JM</strong>, Gootenberg D, Paer J, Rogers Z, Kwon
 D. ID Week 2017 Poster: “HIV-Associated Changes in the Gut Microbiome in
-Untreated, Treated, and Immunologically Controlled Disease”.</p>
-<p>● <strong>Luevano JM</strong>, Gootenberg D, Paer J, Kwon D.
+Untreated, Treated, and Immunologically Controlled Disease”.</p></li>
+<li><p><strong>Luevano JM</strong>, Gootenberg D, Paer J, Kwon D.
 Conference on Retroviruses and Opportunistic Infections (2016) Poster:
 “Impact of HIV-Associated Changes in the Gut Microbiome on Disease
-Progression”.</p>
-<p>● <strong>Luevano JM</strong>, Gatti D, Svenson K, Turnbaugh JM.
+Progression”.</p></li>
+<li><p><strong>Luevano JM</strong>, Gatti D, Svenson K, Turnbaugh JM.
 Chicago Annual Conference for Systems Biology (2012) Poster:
 “Interactions Between Host Genetics, Host Diet, and the Gut Microbiota
-in Response to Diet Shifts”.</p>
-<p>###INVITED AND/OR PEER-SELECTED PRESENTATIONS AT REGIONAL, NATIONAL
-OR INTERNATIONAL LEVELS: * Luevano JM. Panelist for Themed Discussion,
-“HIV &amp; Microbiome”. Conference on Retroviruses and Opportunistic
-Infections (CROI 2016).</p>
+in Response to Diet Shifts”.</p></li>
+</ul>
+</div>
+<div
+id="invited-andor-peer-selected-presentations-at-regional-national-or-international-levels"
+class="section level3">
+<h3>INVITED AND/OR PEER-SELECTED PRESENTATIONS AT REGIONAL, NATIONAL OR
+INTERNATIONAL LEVELS:</h3>
+<ul>
+<li><strong>Luevano JM.</strong> Panelist for Themed Discussion, “HIV
+&amp; Microbiome”. Conference on Retroviruses and Opportunistic
+Infections (CROI 2016).</li>
+</ul>
 </div>
 </div>
 </div>

index.Rmd

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   html_document:
     toc: true
     toc_float: true
-    theme: cerulean
+    theme: yeti
 ---
 
 # Welcome

index.html

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 <script src="site_libs/header-attrs-2.24/header-attrs.js"></script>
 <script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
 <meta name="viewport" content="width=device-width, initial-scale=1" />
-<link href="site_libs/bootstrap-3.3.5/css/cerulean.min.css" rel="stylesheet" />
+<link href="site_libs/bootstrap-3.3.5/css/yeti.min.css" rel="stylesheet" />
 <script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
 <script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
 <script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>