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Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

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@neufeld

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  • qiime2-helpers Public

    Helper scripts to streamline QIIME2 analyses

    Python BSD 3-Clause "New" or "Revised" License Updated May 23, 2024

  • jmtsuji.github.io Public

    Back end of research intro website

    HTML MIT License Updated Mar 14, 2024

  • Ca-Chlorohelix-allophototropha-RCI Public

    Code repository associated with the manuscript, "'Candidatus Chlorohelix allophototropha,' the first anoxygenic phototrophic Chloroflexota member to use a Type I photosynthetic reaction center"

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Mar 13, 2024

  • atlas2-helpers Public

    Helper scripts for post-processing of ATLAS output, version 2 and higher

    Python BSD 3-Clause "New" or "Revised" License Updated Nov 7, 2023

  • basic-sequence-analysis Public

    Personal scripts for performing basic sequence file manipulations (FastA, FastQ)

    HTML BSD 3-Clause "New" or "Revised" License Updated Sep 26, 2023

  • bioinformatics-m1 Public

    Notes about migration to an M1 Mac as a bioinformatics user

    BSD 3-Clause "New" or "Revised" License Updated Apr 26, 2022

  • atlas Public

    Forked from metagenome-atlas/atlas

    ATLAS - Three commands to start analysing your metagenome data

    Python BSD 3-Clause "New" or "Revised" License Updated Jul 30, 2021

  • NanoCLUST Public

    Forked from genomicsITER/NanoCLUST

    NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

    Nextflow MIT License Updated Jun 16, 2021

  • chlorobia-cyc2-genomics Public

    Companion repository to the manuscript, "Anoxygenic photosynthesis and iron–sulfur metabolic potential of Chlorobia populations from seasonally anoxic Boreal Shield lakes"

    Jupyter Notebook 1 BSD 3-Clause "New" or "Revised" License Updated Aug 4, 2020

  • metannotate-analysis Public

    Code to process and visualize output from MetAnnotate (DoxeyLab tool)

    R 4 2 BSD 3-Clause "New" or "Revised" License Updated Jun 5, 2020

  • tellread_format_conversion Public

    Simple scripts for handling the output of the TELL-Read pipeline

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 12, 2020

  • 96-well-spec-analysis Public

    Scripts for quickly processing 96 well plate data from the Neufeld lab spec

    R 1 BSD 3-Clause "New" or "Revised" License Updated Nov 21, 2019

  • bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell Updated Aug 8, 2019

  • atlas-extensions Public

    Extensions to the PNNL ATLAS pipeline

    Shell 3 BSD 3-Clause "New" or "Revised" License Updated Nov 7, 2018

  • axiome-extensions Public

    Misc personal scripts to extend or improve AXIOME

    R 1 BSD 3-Clause "New" or "Revised" License Updated Sep 25, 2018

  • atlas-wrapper Public

    A wrapper to run ATLAS within a Docker container

    Shell 2 BSD 3-Clause "New" or "Revised" License Updated Feb 12, 2018

  • GC-spec-analysis Public

    A collection of scripts for working with GC/spectrophotometer data. Includes converting from standard curves, and so on.

    R 1 BSD 3-Clause "New" or "Revised" License Updated Aug 16, 2017

  • PANDAseq-MGtools Public

    Collection of scripts to optimize and use PANDAseq for paired-end alignment of metagenomic reads

    Python 2 GNU General Public License v3.0 Updated Apr 29, 2016