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Plaspline Public
Forked from Wanli-HE/PlasplineThe code for Plaspline workflow as used in the study
Python UpdatedJul 19, 2024 -
MetagenomeCourse2019 Public
Forked from karkman/MetagenomeCourse2019Course material for the metagenomics course
Shell UpdatedMay 24, 2019 -
Metagenomics Public
Forked from KatariinaParnanen/MetagenomicsMetagenome analysis tools
Shell UpdatedMar 18, 2019 -
crAssphage_project Public
Forked from karkman/crAssphage_projectSource code for the crAssphage project
TeX UpdatedJan 14, 2019 -
parse_diamond Public
Forked from karkman/parse_diamondA simple script to parse DIAMOND results in to a data frame
Python UpdatedFeb 21, 2018 -
MobileGeneticElementDatabase Public
Forked from KatariinaParnanen/MobileGeneticElementDatabaseContains a fasta format database of a large variety of mobile genetic elements and an annotation file
UpdatedDec 28, 2017 -
masame Public
Forked from pbuttigieg/masameCode to run the shiny functions for the MASAME suite
R UpdatedNov 17, 2016 -
kraken Public
Forked from DerrickWood/krakenKraken taxonomic sequence classification system
C++ GNU General Public License v3.0 UpdatedMay 8, 2014 -
STAMP Public
Forked from donovan-h-parks/STAMPStatistical Analysis of Metagenomic Profiles
Python GNU General Public License v3.0 UpdatedMar 5, 2014 -
qiime Public
Forked from biocore/qiimeQuantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
Python UpdatedOct 13, 2013 -
oligotyping Public
Forked from merenlab/oligotypingExploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa
Python GNU General Public License v2.0 UpdatedAug 25, 2013 -
pommunity Public
Forked from meren/pommunityA tool to produce sequences with Roche/454 errors to create realistic pseudo-microbial communities.
Python UpdatedMay 9, 2013