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Simone Rubinacci committed Apr 3, 2020
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4 changes: 2 additions & 2 deletions docs/commands.html
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Expand Up @@ -62,9 +62,9 @@ <h1>GLIMPSE command options</h1>
<h4>
<p><b>Tool name:</b></p>
<p><a href="#chunk" class="label label-success">GLIMPSE chunk</a> defines chunks where to run imputation</p>
<p><a href="#phase" class="label label-info">GLIMPSE phase</a> main GLIMPSE algorihm, performs phasing and imputation refining genotype likelihoods</p>
<p><a href="#phase" class="label label-info">GLIMPSE phase</a> main GLIMPSE algorithm, performs phasing and imputation refining genotype likelihoods</p>
<p><a href="#ligate" class="label label-primary">GLIMPSE ligate</a> concatenate imputation chunks in a single VCF/BCF file ligating phased information</p>
<p><a href="#sample" class="label label-warning">GLIMPSE sample</a> generate haplotype calls by sampling haplotypes</p>
<p><a href="#sample" class="label label-warning">GLIMPSE sample</a> generate haplotype calls by sampling haplotype estimates</p>
<hr>
<p><b>Detailed description</b></p>
</h4>
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