Applying jDR methods to CMI-PB

Chromatin loops can connect genetic elements together, this package attempt to do the same at the data-level and builds on tools such as pybedtools.

As the Ay Lab we are competing in the DChallenge where we are looking SNPs colocalizing for T1D and expression and integrating this with HiChIP interactions.

Attempting to install and run the ChIPLine Pipelin

Snakemake tutorial

Testing out various loop callers

Personal best practices with Snakemake

Improving my linux practice through mini-tutorials

Testing DNA 3D structure software for PASTIS data

CMI-PB tutorial for contestants.

Bioinformaticians take for granted so many standardized datasets. Let's pay more attention to those neat details.

Analyzing ATAC-seq data to find ecDNA

Bioinformatics algorithms