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Low-level Python library used to interact with a Substra network

Python 276 36 Updated Oct 14, 2024

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

Python 208 25 Updated Jun 19, 2024

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Python 627 71 Updated Mar 6, 2025

Optimal transport tools implemented with the JAX framework, to solve large scale matching problems of any flavor.

Python 569 86 Updated Mar 7, 2025

Poisson-based algorithm for stable inference of DNA Structure

Python 36 15 Updated Feb 23, 2022

Hardware accelerated, batchable and differentiable optimizers in JAX.

Python 954 68 Updated Sep 17, 2024

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Python 233 36 Updated Oct 9, 2024
Python 213 17 Updated Jan 31, 2022
C++ 24 13 Updated Oct 26, 2021