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Software for painlessly estimating average nucleotide diversity within and between populations
A Mathematica pipeline for genetic analysis in multiparental populations
A tutorial to perform RNA-Seq data processing and analysis
CBC-UCONN / RNAseq_nonmodel
Forked from golden75/RNA-Sequence-Analysis-Non-Model-Species-Eastern-larchscRNAseq analysis notes from Ming Tang
Wrapper script to identify TEs and mask genome
RNAseq analysis notes from Ming Tang
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
An R package to estimate the quality of imputation of genotypes.
Post imputation QC and processing of Michigan Imputation Server Jobs
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson cor…
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings
Compute haplotype and genotype probabilities, and perform imputation, in arbitrary pedigrees, including cases under possible observational errors.
The hap-ibd program detects identity-by-descent segments in phased genotype data.
Scripts for analyses and figures for SNP STR Imputation manuscript
Version of BEAGLE capable of outputting phased genotype probabilities